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Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Altschul SF, et al. J Mol Biol. 1990 Oct 5;215(3):403-10. doi: 10.1016/S0022-2836(05)80360-2. J Mol Biol. 1990. PMID: 2231712
Initial Cluster Analysis.
Altschul SF, Neuwald AF. Altschul SF, et al. J Comput Biol. 2018 Feb;25(2):121-129. doi: 10.1089/cmb.2017.0050. Epub 2017 Aug 3. J Comput Biol. 2018. PMID: 28771374 Free PMC article.
Outlier detection in BLAST hits.
Shah N, Altschul SF, Pop M. Shah N, et al. Among authors: altschul sf. Algorithms Mol Biol. 2018 Mar 22;13:7. doi: 10.1186/s13015-018-0126-3. eCollection 2018. Algorithms Mol Biol. 2018. PMID: 29588650 Free PMC article.
The compositional adjustment of amino acid substitution matrices.
Yu YK, Wootton JC, Altschul SF. Yu YK, et al. Among authors: altschul sf. Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15688-93. doi: 10.1073/pnas.2533904100. Epub 2003 Dec 8. Proc Natl Acad Sci U S A. 2003. PMID: 14663142 Free PMC article.
Log-odds sequence logos.
Yu YK, Capra JA, Stojmirović A, Landsman D, Altschul SF. Yu YK, et al. Among authors: altschul sf. Bioinformatics. 2015 Feb 1;31(3):324-31. doi: 10.1093/bioinformatics/btu634. Epub 2014 Oct 6. Bioinformatics. 2015. PMID: 25294922 Free PMC article.
Domain enhanced lookup time accelerated BLAST.
Boratyn GM, Schäffer AA, Agarwala R, Altschul SF, Lipman DJ, Madden TL. Boratyn GM, et al. Among authors: altschul sf. Biol Direct. 2012 Apr 17;7:12. doi: 10.1186/1745-6150-7-12. Biol Direct. 2012. PMID: 22510480 Free PMC article.
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