Skip to main page content
Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

My NCBI Filters
Text availability
Article attribute
Article type
Publication date

Search Results

62 results
Filters applied: . Clear all Results are displayed in a computed author sort order. Results by year timeline is unavailable
Page 1
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Altschul SF, et al. Nucleic Acids Res. 1997 Sep 1;25(17):3389-402. doi: 10.1093/nar/25.17.3389. Nucleic Acids Res. 1997. PMID: 9254694 Free PMC article. Review.
Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties.
Neuwald AF, Altschul SF. Neuwald AF, et al. Among authors: altschul sf. PLoS Comput Biol. 2016 May 18;12(5):e1004936. doi: 10.1371/journal.pcbi.1004936. eCollection 2016 May. PLoS Comput Biol. 2016. PMID: 27192614 Free PMC article.
Outlier detection in BLAST hits.
Shah N, Altschul SF, Pop M. Shah N, et al. Among authors: altschul sf. Algorithms Mol Biol. 2018 Mar 22;13:7. doi: 10.1186/s13015-018-0126-3. eCollection 2018. Algorithms Mol Biol. 2018. PMID: 29588650 Free PMC article.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA; Mammalian Gene Collection Program Team. Strausberg RL, et al. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. doi: 10.1073/pnas.242603899. Epub 2002 Dec 11. Proc Natl Acad Sci U S A. 2002. PMID: 12477932 Free PMC article.
The compositional adjustment of amino acid substitution matrices.
Yu YK, Wootton JC, Altschul SF. Yu YK, et al. Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15688-93. doi: 10.1073/pnas.2533904100. Epub 2003 Dec 8. Proc Natl Acad Sci U S A. 2003. PMID: 14663142 Free PMC article.
Log-odds sequence logos.
Yu YK, Capra JA, Stojmirović A, Landsman D, Altschul SF. Yu YK, et al. Among authors: altschul sf. Bioinformatics. 2015 Feb 1;31(3):324-31. doi: 10.1093/bioinformatics/btu634. Epub 2014 Oct 6. Bioinformatics. 2015. PMID: 25294922 Free PMC article.
Domain enhanced lookup time accelerated BLAST.
Boratyn GM, Schäffer AA, Agarwala R, Altschul SF, Lipman DJ, Madden TL. Boratyn GM, et al. Biol Direct. 2012 Apr 17;7:12. doi: 10.1186/1745-6150-7-12. Biol Direct. 2012. PMID: 22510480 Free PMC article.
An assessment of substitution scores for protein profile-profile comparison.
Ye X, Wang G, Altschul SF. Ye X, et al. Bioinformatics. 2011 Dec 15;27(24):3356-63. doi: 10.1093/bioinformatics/btr565. Epub 2011 Oct 13. Bioinformatics. 2011. PMID: 21998158 Free PMC article.
CONTACT: altschul@ncbi.nlm.nih.gov SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online....
CONTACT: altschul@ncbi.nlm.nih.gov SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online....
The complexity of the dirichlet model for multiple alignment data.
Yu YK, Altschul SF. Yu YK, et al. J Comput Biol. 2011 Aug;18(8):925-39. doi: 10.1089/cmb.2011.0039. Epub 2011 Jun 24. J Comput Biol. 2011. PMID: 21702692 Free PMC article.
On the inference of dirichlet mixture priors for protein sequence comparison.
Ye X, Yu YK, Altschul SF. Ye X, et al. J Comput Biol. 2011 Aug;18(8):941-54. doi: 10.1089/cmb.2011.0040. Epub 2011 Jun 24. J Comput Biol. 2011. PMID: 21702690 Free PMC article.
62 results
Jump to page
Feedback