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Mechanisms of genome evolution of Streptococcus.
Andam CP, Hanage WP. Andam CP, et al. Infect Genet Evol. 2015 Jul;33:334-42. doi: 10.1016/j.meegid.2014.11.007. Epub 2014 Nov 13. Infect Genet Evol. 2015. PMID: 25461843 Free PMC article. Review.
Multilevel populations and the evolution of antibiotic resistance through horizontal gene transfer.
Andam CP, Fournier GP, Gogarten JP. Andam CP, et al. FEMS Microbiol Rev. 2011 Sep;35(5):756-67. doi: 10.1111/j.1574-6976.2011.00274.x. Epub 2011 May 20. FEMS Microbiol Rev. 2011. PMID: 21521245 Review.
Molecular evolution of aminoacyl tRNA synthetase proteins in the early history of life.
Fournier GP, Andam CP, Alm EJ, Gogarten JP. Fournier GP, et al. Among authors: andam cp. Orig Life Evol Biosph. 2011 Dec;41(6):621-32. doi: 10.1007/s11084-011-9261-2. Epub 2011 Dec 27. Orig Life Evol Biosph. 2011. PMID: 22200905
Ancient horizontal gene transfer and the last common ancestors.
Fournier GP, Andam CP, Gogarten JP. Fournier GP, et al. Among authors: andam cp. BMC Evol Biol. 2015 Apr 22;15:70. doi: 10.1186/s12862-015-0350-0. BMC Evol Biol. 2015. PMID: 25897759 Free PMC article.
Microbial Genomics of Ancient Plagues and Outbreaks.
Andam CP, Worby CJ, Chang Q, Campana MG. Andam CP, et al. Trends Microbiol. 2016 Dec;24(12):978-990. doi: 10.1016/j.tim.2016.08.004. Epub 2016 Sep 8. Trends Microbiol. 2016. PMID: 27618404 Review.
Recombination in Streptococcus pneumoniae Lineages Increase with Carriage Duration and Size of the Polysaccharide Capsule.
Chaguza C, Andam CP, Harris SR, Cornick JE, Yang M, Bricio-Moreno L, Kamng'ona AW, Parkhill J, French N, Heyderman RS, Kadioglu A, Everett DB, Bentley SD, Hanage WP. Chaguza C, et al. Among authors: andam cp. mBio. 2016 Sep 27;7(5):e01053-16. doi: 10.1128/mBio.01053-16. mBio. 2016. PMID: 27677790 Free PMC article.
Understanding pneumococcal serotype 1 biology through population genomic analysis.
Chaguza C, Cornick JE, Harris SR, Andam CP, Bricio-Moreno L, Yang M, Yalcin F, Ousmane S, Govindpersad S, Senghore M, Ebruke C, Du Plessis M, Kiran AM, Pluschke G, Sigauque B, McGee L, Klugman KP, Turner P, Corander J, Parkhill J, Collard JM, Antonio M, von Gottberg A, Heyderman RS, French N, Kadioglu A, Hanage WP, Everett DB, Bentley SD; PAGe Consortium. Chaguza C, et al. Among authors: andam cp. BMC Infect Dis. 2016 Nov 8;16(1):649. doi: 10.1186/s12879-016-1987-z. BMC Infect Dis. 2016. PMID: 27821148 Free PMC article.
Substitutions of short heterologous DNA segments of intragenomic or extragenomic origins produce clustered genomic polymorphisms.
Harms K, Lunnan A, Hülter N, Mourier T, Vinner L, Andam CP, Marttinen P, Fridholm H, Hansen AJ, Hanage WP, Nielsen KM, Willerslev E, Johnsen PJ. Harms K, et al. Among authors: andam cp. Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):15066-15071. doi: 10.1073/pnas.1615819114. Epub 2016 Dec 12. Proc Natl Acad Sci U S A. 2016. PMID: 27956618 Free PMC article.
Genomic Epidemiology of Penicillin-Nonsusceptible Pneumococci with Nonvaccine Serotypes Causing Invasive Disease in the United States.
Andam CP, Mitchell PK, Callendrello A, Chang Q, Corander J, Chaguza C, McGee L, Beall BW, Hanage WP. Andam CP, et al. J Clin Microbiol. 2017 Apr;55(4):1104-1115. doi: 10.1128/JCM.02453-16. Epub 2017 Jan 18. J Clin Microbiol. 2017. PMID: 28100596 Free PMC article.
Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations.
Mostowy R, Croucher NJ, Andam CP, Corander J, Hanage WP, Marttinen P. Mostowy R, et al. Among authors: andam cp. Mol Biol Evol. 2017 May 1;34(5):1167-1182. doi: 10.1093/molbev/msx066. Mol Biol Evol. 2017. PMID: 28199698 Free PMC article.
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