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A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: support vector machine classification of peptide MS/MS spectra and SEQUEST scores.
Anderson DC, Li W, Payan DG, Noble WS. Anderson DC, et al. J Proteome Res. 2003 Mar-Apr;2(2):137-46. doi: 10.1021/pr0255654. J Proteome Res. 2003. PMID: 12716127
A soluble 3D LC/MS/MS proteome of the filamentous cyanobacterium Nostoc punctiforme.
Anderson DC, Campbell EL, Meeks JC. Anderson DC, et al. J Proteome Res. 2006 Nov;5(11):3096-104. doi: 10.1021/pr060272m. J Proteome Res. 2006. PMID: 17081061
Use of MEDUSA-based data analysis and capillary HPLC-ion-trap mass spectrometry to examine complex immunoaffinity extracts of RBAp48.
Gururaja T, Li W, Bernstein J, Payan DG, Anderson DC. Gururaja T, et al. Among authors: anderson dc. J Proteome Res. 2002 May-Jun;1(3):253-61. doi: 10.1021/pr0255147. J Proteome Res. 2002. PMID: 12645902
Riboproteomics of the hepatitis C virus internal ribosomal entry site.
Lu H, Li W, Noble WS, Payan D, Anderson DC. Lu H, et al. Among authors: anderson dc. J Proteome Res. 2004 Sep-Oct;3(5):949-57. doi: 10.1021/pr0499592. J Proteome Res. 2004. PMID: 15473682
Cellular interacting proteins of functional screen-derived antiproliferative and cytotoxic peptides discovered using shotgun peptide sequencing.
Gururaja T, Li W, Catalano S, Bogenberger J, Zheng J, Keller B, Vialard J, Janicot M, Li L, Hitoshi Y, Payan DG, Anderson DC. Gururaja T, et al. Among authors: anderson dc. Chem Biol. 2003 Oct;10(10):927-37. doi: 10.1016/j.chembiol.2003.09.010. Chem Biol. 2003. PMID: 14583259 No abstract available.
Multiple functional categories of proteins identified in an in vitro cellular ubiquitin affinity extract using shotgun peptide sequencing.
Gururaja T, Li W, Noble WS, Payan DG, Anderson DC. Gururaja T, et al. Among authors: anderson dc. J Proteome Res. 2003 Jul-Aug;2(4):394-404. doi: 10.1021/pr034019n. J Proteome Res. 2003. PMID: 12938929
Utility of peptide-protein affinity complexes in proteomics: identification of interaction partners of a tumor suppressor peptide.
Gururaja TL, Li W, Payan DG, Anderson DC. Gururaja TL, et al. Among authors: anderson dc. J Pept Res. 2003 Apr;61(4):163-76. doi: 10.1034/j.1399-3011.2003.00044.x. J Pept Res. 2003. PMID: 12605602
Intracellular protein scaffold-mediated display of random peptide libraries for phenotypic screens in mammalian cells.
Peelle B, Lorens J, Li W, Bogenberger J, Payan DG, Anderson DC. Peelle B, et al. Among authors: anderson dc. Chem Biol. 2001 May;8(5):521-34. doi: 10.1016/s1074-5521(01)00031-x. Chem Biol. 2001. PMID: 11358698
Retroviral delivery of peptide modulators of cellular functions.
Lorens JB, Bennett MK, Pearsall DM, Throndset WR, Rossi AB, Armstrong RJ, Fox BP, Chan EH, Luo Y, Masuda E, Ferrick DA, Anderson DC, Payan DG, Nolan GP. Lorens JB, et al. Among authors: anderson dc. Mol Ther. 2000 May;1(5 Pt 1):438-47. doi: 10.1006/mthe.2000.0063. Mol Ther. 2000. PMID: 10933965
Gas phase dimerization of neuropeptide head activator analogs useful for the noncovalent constraint of peptides.
Gururaja TL, Payan DG, Anderson DC. Gururaja TL, et al. Among authors: anderson dc. Biopolymers. 2007;88(1):55-63. doi: 10.1002/bip.20626. Biopolymers. 2007. PMID: 17091497
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