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Comparison of ARM and HEAT protein repeats.
Andrade MA, Petosa C, O'Donoghue SI, Müller CW, Bork P. Andrade MA, et al. J Mol Biol. 2001 May 25;309(1):1-18. doi: 10.1006/jmbi.2001.4624. J Mol Biol. 2001. PMID: 11491282 Review.
NEAT: a domain duplicated in genes near the components of a putative Fe3+ siderophore transporter from Gram-positive pathogenic bacteria.
Andrade MA, Ciccarelli FD, Perez-Iratxeta C, Bork P. Andrade MA, et al. Genome Biol. 2002 Aug 15;3(9):RESEARCH0047. doi: 10.1186/gb-2002-3-9-research0047. Epub 2002 Aug 15. Genome Biol. 2002. PMID: 12225586 Free PMC article.
Global analysis of bacterial transcription factors to predict cellular target processes.
Doerks T, Andrade MA, Lathe W 3rd, von Mering C, Bork P. Doerks T, et al. Among authors: andrade ma. Trends Genet. 2004 Mar;20(3):126-31. doi: 10.1016/j.tig.2004.01.006. Trends Genet. 2004. PMID: 15049306 Review.
Human Lsg1 defines a family of essential GTPases that correlates with the evolution of compartmentalization.
Reynaud EG, Andrade MA, Bonneau F, Ly TB, Knop M, Scheffzek K, Pepperkok R. Reynaud EG, et al. Among authors: andrade ma. BMC Biol. 2005 Oct 7;3:21. doi: 10.1186/1741-7007-3-21. BMC Biol. 2005. PMID: 16209721 Free PMC article.
Systematic association of genes to phenotypes by genome and literature mining.
Korbel JO, Doerks T, Jensen LJ, Perez-Iratxeta C, Kaczanowski S, Hooper SD, Andrade MA, Bork P. Korbel JO, et al. Among authors: andrade ma. PLoS Biol. 2005 May;3(5):e134. doi: 10.1371/journal.pbio.0030134. Epub 2005 Apr 5. PLoS Biol. 2005. PMID: 15799710 Free PMC article.
Automatic annotation for biological sequences by extraction of keywords from MEDLINE abstracts. Development of a prototype system.
Andrade MA, Valencia A. Andrade MA, et al. Proc Int Conf Intell Syst Mol Biol. 1997;5:25-32. Proc Int Conf Intell Syst Mol Biol. 1997. PMID: 9322011
The GeneQuiz web server: protein functional analysis through the Web.
Hoersch S, Leroy C, Brown NP, Andrade MA, Sander C. Hoersch S, et al. Among authors: andrade ma. Trends Biochem Sci. 2000 Jan;25(1):33-5. doi: 10.1016/s0968-0004(99)01510-8. Trends Biochem Sci. 2000. PMID: 10637611 No abstract available.
Adaptation of protein surfaces to subcellular location.
Andrade MA, O'Donoghue SI, Rost B. Andrade MA, et al. J Mol Biol. 1998 Feb 20;276(2):517-25. doi: 10.1006/jmbi.1997.1498. J Mol Biol. 1998. PMID: 9512720
Automated genome sequence analysis and annotation.
Andrade MA, Brown NP, Leroy C, Hoersch S, de Daruvar A, Reich C, Franchini A, Tamames J, Valencia A, Ouzounis C, Sander C. Andrade MA, et al. Bioinformatics. 1999 May;15(5):391-412. doi: 10.1093/bioinformatics/15.5.391. Bioinformatics. 1999. PMID: 10366660
DNA sequencing and analysis of 130 kb from yeast chromosome XV.
Voss H, Benes V, Andrade MA, Valencia A, Rechmann S, Teodoru C, Schwager C, Paces V, Sander C, Ansorge W. Voss H, et al. Among authors: andrade ma. Yeast. 1997 Jun 15;13(7):655-72. doi: 10.1002/(SICI)1097-0061(19970615)13:7<655::AID-YEA120>3.0.CO;2-I. Yeast. 1997. PMID: 9200815
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