Andrade-Navarro MA - Search Results

1

TAF-ChIP: an ultra-low input approach for genome-wide chromatin immunoprecipitation assay.

Akhtar J, More P, Albrecht S, Marini F, Kaiser W, Kulkarni A, Wojnowski L, Fontaine JF, Andrade-Navarro MA, Silies M, Berger C. Akhtar J, et al. Life Sci Alliance. 2019 Jul 22;2(4):e201900318. doi: 10.26508/lsa.201900318. Print 2019 Aug. Life Sci Alliance. 2019. PMID: 31331983 Free PMC article.

2

MedlineRanker: flexible ranking of biomedical literature.

Fontaine JF, Barbosa-Silva A, Schaefer M, Huska MR, Muro EM, Andrade-Navarro MA. Fontaine JF, et al. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W141-6. doi: 10.1093/nar/gkp353. Epub 2009 May 8. Nucleic Acids Res. 2009. PMID: 19429696 Free PMC article.

3

LAITOR--Literature Assistant for Identification of Terms co-Occurrences and Relationships.

Barbosa-Silva A, Soldatos TG, Magalhães IL, Pavlopoulos GA, Fontaine JF, Andrade-Navarro MA, Schneider R, Ortega JM. Barbosa-Silva A, et al. BMC Bioinformatics. 2010 Feb 1;11:70. doi: 10.1186/1471-2105-11-70. BMC Bioinformatics. 2010. PMID: 20122157 Free PMC article.

4

Génie: literature-based gene prioritization at multi genomic scale.

Fontaine JF, Priller F, Barbosa-Silva A, Andrade-Navarro MA. Fontaine JF, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W455-61. doi: 10.1093/nar/gkr246. Epub 2011 May 23. Nucleic Acids Res. 2011. PMID: 21609954 Free PMC article.

5

PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries.

Barbosa-Silva A, Fontaine JF, Donnard ER, Stussi F, Ortega JM, Andrade-Navarro MA. Barbosa-Silva A, et al. BMC Bioinformatics. 2011 Nov 9;12:435. doi: 10.1186/1471-2105-12-435. BMC Bioinformatics. 2011. PMID: 22070195 Free PMC article.

6

HIPPIE: Integrating protein interaction networks with experiment based quality scores.

Schaefer MH, Fontaine JF, Vinayagam A, Porras P, Wanker EE, Andrade-Navarro MA. Schaefer MH, et al. PLoS One. 2012;7(2):e31826. doi: 10.1371/journal.pone.0031826. Epub 2012 Feb 14. PLoS One. 2012. PMID: 22348130 Free PMC article.

7

Adding protein context to the human protein-protein interaction network to reveal meaningful interactions.

Schaefer MH, Lopes TJ, Mah N, Shoemaker JE, Matsuoka Y, Fontaine JF, Louis-Jeune C, Eisfeld AJ, Neumann G, Perez-Iratxeta C, Kawaoka Y, Kitano H, Andrade-Navarro MA. Schaefer MH, et al. PLoS Comput Biol. 2013;9(1):e1002860. doi: 10.1371/journal.pcbi.1002860. Epub 2013 Jan 3. PLoS Comput Biol. 2013. PMID: 23300433 Free PMC article.

8

Using cited references to improve the retrieval of related biomedical documents.

Ortuño FM, Rojas I, Andrade-Navarro MA, Fontaine JF. Ortuño FM, et al. BMC Bioinformatics. 2013 Mar 27;14:113. doi: 10.1186/1471-2105-14-113. BMC Bioinformatics. 2013. PMID: 23537461 Free PMC article.

9

CellFinder: a cell data repository.

Stachelscheid H, Seltmann S, Lekschas F, Fontaine JF, Mah N, Neves M, Andrade-Navarro MA, Leser U, Kurtz A. Stachelscheid H, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D950-8. doi: 10.1093/nar/gkt1264. Epub 2013 Dec 3. Nucleic Acids Res. 2014. PMID: 24304896 Free PMC article.

10

Assessment of curated phenotype mining in neuropsychiatric disorder literature.

Fontaine JF, Priller J, Spruth E, Perez-Iratxeta C, Andrade-Navarro MA. Fontaine JF, et al. Methods. 2015 Mar;74:90-6. doi: 10.1016/j.ymeth.2014.11.022. Epub 2014 Dec 5. Methods. 2015. PMID: 25484337

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