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Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis.
Bergiers I, Andrews T, Vargel Bölükbaşı Ö, Buness A, Janosz E, Lopez-Anguita N, Ganter K, Kosim K, Celen C, Itır Perçin G, Collier P, Baying B, Benes V, Hemberg M, Lancrin C. Bergiers I, et al. Among authors: Andrews T. Elife. 2018 Mar 20;7:e29312. doi: 10.7554/eLife.29312. Elife. 2018. PMID: 29555020 Free PMC article.
SC3: consensus clustering of single-cell RNA-seq data.
Kiselev VY, Kirschner K, Schaub MT, Andrews T, Yiu A, Chandra T, Natarajan KN, Reik W, Barahona M, Green AR, Hemberg M. Kiselev VY, et al. Among authors: Andrews T. Nat Methods. 2017 May;14(5):483-486. doi: 10.1038/nmeth.4236. Epub 2017 Mar 27. Nat Methods. 2017. PMID: 28346451 Free PMC article.
Identifying cell populations with scRNASeq.
Andrews TS, Hemberg M. Andrews TS, et al. Mol Aspects Med. 2018 Feb;59:114-122. doi: 10.1016/j.mam.2017.07.002. Epub 2017 Jul 25. Mol Aspects Med. 2018. PMID: 28712804 Review.
Challenges in unsupervised clustering of single-cell RNA-seq data.
Kiselev VY, Andrews TS, Hemberg M. Kiselev VY, et al. Among authors: Andrews TS. Nat Rev Genet. 2019 May;20(5):273-282. doi: 10.1038/s41576-018-0088-9. Nat Rev Genet. 2019. PMID: 30617341 Review.
False signals induced by single-cell imputation.
Andrews TS, Hemberg M. Andrews TS, et al. Version 2. F1000Res. 2018 Nov 2;7:1740. doi: 10.12688/f1000research.16613.2. eCollection 2018. F1000Res. 2018. PMID: 30906525 Free PMC article.
M3Drop: dropout-based feature selection for scRNASeq.
Andrews TS, Hemberg M. Andrews TS, et al. Bioinformatics. 2019 Aug 15;35(16):2865-2867. doi: 10.1093/bioinformatics/bty1044. Bioinformatics. 2019. PMID: 30590489 Free PMC article.
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