In silico study of antibacterial tyrosyl-tRNA synthetase and toxicity of main phytoconstituents from three active essential oils

J Biomol Struct Dyn. 2024 Feb-Mar;42(3):1404-1416. doi: 10.1080/07391102.2023.2199865. Epub 2023 Apr 17.

Abstract

The misuse and overuse of antibiotics have resulted in antibiotic resistance. However, there are alternative approaches that could either substitute antibiotics or enhance their effectiveness without harmful side effects. One such approach is the use of terpene-rich essential oils. In this study, we aimed to demonstrate the antibacterial activity of the main components of three plant essential oils, namely Anthemis punctata, Anthemis pedunculata and Daucus crinitus. Specifically, we targeted bacterial tyrosyl-tRNA synthetase, an enzyme that plays a critical role in bacterial protein synthesis. To investigate how the phytocompounds interact with the enzyme's active sites, we employed a molecular docking study using Autodock Software Tools 1.5.7. Our findings revealed that all 28 phytocompounds bound to the enzyme's active sites with binding energies ranging from -6.96 to -4.03 kcal/mol. These results suggest that terpene-rich essential oils could be a potential source of novel antimicrobial agents.Communicated by Ramaswamy H. Sarma.

Keywords: Molecular docking; antibacterial; essential oil; phytoconstituents; tyrosyl-tRNA synthetase.

MeSH terms

  • Anti-Bacterial Agents / chemistry
  • Anti-Bacterial Agents / pharmacology
  • Molecular Docking Simulation
  • Oils, Volatile* / pharmacology
  • Terpenes / pharmacology
  • Tyrosine-tRNA Ligase* / metabolism

Substances

  • Tyrosine-tRNA Ligase
  • Oils, Volatile
  • Anti-Bacterial Agents
  • Terpenes