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SPOUT: a class of methyltransferases that includes spoU and trmD RNA methylase superfamilies, and novel superfamilies of predicted prokaryotic RNA methylases.
Anantharaman V, Koonin EV, Aravind L. Anantharaman V, et al. Among authors: aravind l. J Mol Microbiol Biotechnol. 2002 Jan;4(1):71-5. J Mol Microbiol Biotechnol. 2002. PMID: 11763972 No abstract available.
Genomics: re-evaluation of translation machinery evolution.
Koonin EV, Aravind L. Koonin EV, et al. Among authors: aravind l. Curr Biol. 1998 Apr 9;8(8):R266-9. doi: 10.1016/s0960-9822(98)70169-1. Curr Biol. 1998. PMID: 9550696
The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold.
Aravind L, Galperin MY, Koonin EV. Aravind L, et al. Trends Biochem Sci. 1998 Apr;23(4):127-9. doi: 10.1016/s0968-0004(98)01189-x. Trends Biochem Sci. 1998. PMID: 9584613 No abstract available.
Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Aravind L, Leipe DD, Koonin EV. Aravind L, et al. Nucleic Acids Res. 1998 Sep 15;26(18):4205-13. doi: 10.1093/nar/26.18.4205. Nucleic Acids Res. 1998. PMID: 9722641 Free PMC article.
AT-hook motifs identified in a wide variety of DNA-binding proteins.
Aravind L, Landsman D. Aravind L, et al. Nucleic Acids Res. 1998 Oct 1;26(19):4413-21. doi: 10.1093/nar/26.19.4413. Nucleic Acids Res. 1998. PMID: 9742243 Free PMC article.
The HORMA domain: a common structural denominator in mitotic checkpoints, chromosome synapsis and DNA repair.
Aravind L, Koonin EV. Aravind L, et al. Trends Biochem Sci. 1998 Aug;23(8):284-6. doi: 10.1016/s0968-0004(98)01257-2. Trends Biochem Sci. 1998. PMID: 9757827 Review. No abstract available.
Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamily.
Leonard CJ, Aravind L, Koonin EV. Leonard CJ, et al. Among authors: aravind l. Genome Res. 1998 Oct;8(10):1038-47. doi: 10.1101/gr.8.10.1038. Genome Res. 1998. PMID: 9799791
Fold prediction and evolutionary analysis of the POZ domain: structural and evolutionary relationship with the potassium channel tetramerization domain.
Aravind L, Koonin EV. Aravind L, et al. J Mol Biol. 1999 Jan 29;285(4):1353-61. doi: 10.1006/jmbi.1998.2394. J Mol Biol. 1999. PMID: 9917379
Conserved domains in DNA repair proteins and evolution of repair systems.
Aravind L, Walker DR, Koonin EV. Aravind L, et al. Nucleic Acids Res. 1999 Mar 1;27(5):1223-42. doi: 10.1093/nar/27.5.1223. Nucleic Acids Res. 1999. PMID: 9973609 Free PMC article. Review.
DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history.
Aravind L, Koonin EV. Aravind L, et al. Nucleic Acids Res. 1999 Apr 1;27(7):1609-18. doi: 10.1093/nar/27.7.1609. Nucleic Acids Res. 1999. PMID: 10075991 Free PMC article.
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