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The catalytic domains of thiamine triphosphatase and CyaB-like adenylyl cyclase define a novel superfamily of domains that bind organic phosphates.
Iyer LM, Aravind L. Iyer LM, et al. Among authors: aravind l. BMC Genomics. 2002 Nov 27;3(1):33. doi: 10.1186/1471-2164-3-33. Epub 2002 Nov 27. BMC Genomics. 2002. PMID: 12456267 Free PMC article.
Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Aravind L, Leipe DD, Koonin EV. Aravind L, et al. Nucleic Acids Res. 1998 Sep 15;26(18):4205-13. doi: 10.1093/nar/26.18.4205. Nucleic Acids Res. 1998. PMID: 9722641 Free PMC article.
Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamily.
Leonard CJ, Aravind L, Koonin EV. Leonard CJ, et al. Among authors: aravind l. Genome Res. 1998 Oct;8(10):1038-47. doi: 10.1101/gr.8.10.1038. Genome Res. 1998. PMID: 9799791
Fold prediction and evolutionary analysis of the POZ domain: structural and evolutionary relationship with the potassium channel tetramerization domain.
Aravind L, Koonin EV. Aravind L, et al. J Mol Biol. 1999 Jan 29;285(4):1353-61. doi: 10.1006/jmbi.1998.2394. J Mol Biol. 1999. PMID: 9917379
Conserved domains in DNA repair proteins and evolution of repair systems.
Aravind L, Walker DR, Koonin EV. Aravind L, et al. Nucleic Acids Res. 1999 Mar 1;27(5):1223-42. doi: 10.1093/nar/27.5.1223. Nucleic Acids Res. 1999. PMID: 9973609 Free PMC article. Review.
DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history.
Aravind L, Koonin EV. Aravind L, et al. Nucleic Acids Res. 1999 Apr 1;27(7):1609-18. doi: 10.1093/nar/27.7.1609. Nucleic Acids Res. 1999. PMID: 10075991 Free PMC article.
The domains of death: evolution of the apoptosis machinery.
Aravind L, Dixit VM, Koonin EV. Aravind L, et al. Trends Biochem Sci. 1999 Feb;24(2):47-53. doi: 10.1016/s0968-0004(98)01341-3. Trends Biochem Sci. 1999. PMID: 10098397 Review.
Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches.
Aravind L, Koonin EV. Aravind L, et al. J Mol Biol. 1999 Apr 16;287(5):1023-40. doi: 10.1006/jmbi.1999.2653. J Mol Biol. 1999. PMID: 10222208
Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer.
Ponting CP, Aravind L, Schultz J, Bork P, Koonin EV. Ponting CP, et al. Among authors: aravind l. J Mol Biol. 1999 Jun 18;289(4):729-45. doi: 10.1006/jmbi.1999.2827. J Mol Biol. 1999. PMID: 10369758
Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.
Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV. Makarova KS, et al. Among authors: aravind l. Genome Res. 1999 Jul;9(7):608-28. Genome Res. 1999. PMID: 10413400
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