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The many faces of the helix-turn-helix domain: transcription regulation and beyond.
Aravind L, Anantharaman V, Balaji S, Babu MM, Iyer LM. Aravind L, et al. FEMS Microbiol Rev. 2005 Apr;29(2):231-62. doi: 10.1016/j.femsre.2004.12.008. FEMS Microbiol Rev. 2005. PMID: 15808743 Review.
Genomics: re-evaluation of translation machinery evolution.
Koonin EV, Aravind L. Koonin EV, et al. Among authors: aravind l. Curr Biol. 1998 Apr 9;8(8):R266-9. doi: 10.1016/s0960-9822(98)70169-1. Curr Biol. 1998. PMID: 9550696
The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold.
Aravind L, Galperin MY, Koonin EV. Aravind L, et al. Trends Biochem Sci. 1998 Apr;23(4):127-9. doi: 10.1016/s0968-0004(98)01189-x. Trends Biochem Sci. 1998. PMID: 9584613 No abstract available.
Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Aravind L, Leipe DD, Koonin EV. Aravind L, et al. Nucleic Acids Res. 1998 Sep 15;26(18):4205-13. doi: 10.1093/nar/26.18.4205. Nucleic Acids Res. 1998. PMID: 9722641 Free PMC article.
AT-hook motifs identified in a wide variety of DNA-binding proteins.
Aravind L, Landsman D. Aravind L, et al. Nucleic Acids Res. 1998 Oct 1;26(19):4413-21. doi: 10.1093/nar/26.19.4413. Nucleic Acids Res. 1998. PMID: 9742243 Free PMC article.
The HORMA domain: a common structural denominator in mitotic checkpoints, chromosome synapsis and DNA repair.
Aravind L, Koonin EV. Aravind L, et al. Trends Biochem Sci. 1998 Aug;23(8):284-6. doi: 10.1016/s0968-0004(98)01257-2. Trends Biochem Sci. 1998. PMID: 9757827 Review. No abstract available.
Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamily.
Leonard CJ, Aravind L, Koonin EV. Leonard CJ, et al. Among authors: aravind l. Genome Res. 1998 Oct;8(10):1038-47. doi: 10.1101/gr.8.10.1038. Genome Res. 1998. PMID: 9799791
The HD domain defines a new superfamily of metal-dependent phosphohydrolases.
Aravind L, Koonin EV. Aravind L, et al. Trends Biochem Sci. 1998 Dec;23(12):469-72. doi: 10.1016/s0968-0004(98)01293-6. Trends Biochem Sci. 1998. PMID: 9868367 No abstract available.
Fold prediction and evolutionary analysis of the POZ domain: structural and evolutionary relationship with the potassium channel tetramerization domain.
Aravind L, Koonin EV. Aravind L, et al. J Mol Biol. 1999 Jan 29;285(4):1353-61. doi: 10.1006/jmbi.1998.2394. J Mol Biol. 1999. PMID: 9917379
Conserved domains in DNA repair proteins and evolution of repair systems.
Aravind L, Walker DR, Koonin EV. Aravind L, et al. Nucleic Acids Res. 1999 Mar 1;27(5):1223-42. doi: 10.1093/nar/27.5.1223. Nucleic Acids Res. 1999. PMID: 9973609 Free PMC article. Review.
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