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Structure is three to ten times more conserved than sequence--a study of structural response in protein cores.
Illergård K, Ardell DH, Elofsson A. Illergård K, et al. Among authors: ardell dh. Proteins. 2009 Nov 15;77(3):499-508. doi: 10.1002/prot.22458. Proteins. 2009. PMID: 19507241
TFAM 1.0: an online tRNA function classifier.
Tåquist H, Cui Y, Ardell DH. Tåquist H, et al. Among authors: ardell dh. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W350-3. doi: 10.1093/nar/gkm393. Epub 2007 Jun 25. Nucleic Acids Res. 2007. PMID: 17591612 Free PMC article.
Influences on gene expression in vivo by a Shine-Dalgarno sequence.
Jin H, Zhao Q, Gonzalez de Valdivia EI, Ardell DH, Stenström M, Isaksson LA. Jin H, et al. Among authors: ardell dh. Mol Microbiol. 2006 Apr;60(2):480-92. doi: 10.1111/j.1365-2958.2006.05110.x. Mol Microbiol. 2006. PMID: 16573696
Polymorphism, recombination and alternative unscrambling in the DNA polymerase alpha gene of the ciliate Stylonychia lemnae (Alveolata; class Spirotrichea).
Ardell DH, Lozupone CA, Landweber LF. Ardell DH, et al. Genetics. 2003 Dec;165(4):1761-77. Genetics. 2003. PMID: 14704164 Free PMC article.
SCANMS: adjusting for multiple comparisons in sliding window neutrality tests.
Ardell DH. Ardell DH. Bioinformatics. 2004 Aug 12;20(12):1986-8. doi: 10.1093/bioinformatics/bth187. Epub 2004 Apr 1. Bioinformatics. 2004. PMID: 15059827
Visualizing bacterial tRNA identity determinants and antideterminants using function logos and inverse function logos.
Freyhult E, Moulton V, Ardell DH. Freyhult E, et al. Among authors: ardell dh. Nucleic Acids Res. 2006 Feb 9;34(3):905-16. doi: 10.1093/nar/gkj478. Print 2006. Nucleic Acids Res. 2006. PMID: 16473848 Free PMC article.
Transient erythromycin resistance phenotype associated with peptidyl-tRNA drop-off on early UGG and GGG codons.
Macvanin M, Gonzalez de Valdivia EI, Ardell DH, Isaksson LA. Macvanin M, et al. Among authors: ardell dh. J Bacteriol. 2007 Dec;189(24):8993-9000. doi: 10.1128/JB.01004-07. Epub 2007 Oct 19. J Bacteriol. 2007. PMID: 17951392 Free PMC article.
tRNA signatures reveal a polyphyletic origin of SAR11 strains among alphaproteobacteria.
Amrine KC, Swingley WD, Ardell DH. Amrine KC, et al. Among authors: ardell dh. PLoS Comput Biol. 2014 Feb 27;10(2):e1003454. doi: 10.1371/journal.pcbi.1003454. eCollection 2014 Feb. PLoS Comput Biol. 2014. PMID: 24586126 Free PMC article.
The length of the 5' leader of Escherichia coli tRNA precursors influences bacterial growth.
Fredrik Pettersson BM, Ardell DH, Kirsebom LA. Fredrik Pettersson BM, et al. Among authors: ardell dh. J Mol Biol. 2005 Aug 5;351(1):9-15. doi: 10.1016/j.jmb.2005.05.022. J Mol Biol. 2005. PMID: 16002088
Three neuropeptide Y receptor genes in the spiny dogfish, Squalus acanthias, support en bloc duplications in early vertebrate evolution.
Salaneck E, Ardell DH, Larson ET, Larhammar D. Salaneck E, et al. Among authors: ardell dh. Mol Biol Evol. 2003 Aug;20(8):1271-80. doi: 10.1093/molbev/msg133. Epub 2003 May 30. Mol Biol Evol. 2003. PMID: 12777532
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