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MolProbity: More and better reference data for improved all-atom structure validation.
Williams CJ, Headd JJ, Moriarty NW, Prisant MG, Videau LL, Deis LN, Verma V, Keedy DA, Hintze BJ, Chen VB, Jain S, Lewis SM, Arendall WB 3rd, Snoeyink J, Adams PD, Lovell SC, Richardson JS, Richardson DC. Williams CJ, et al. Among authors: arendall wb 3rd. Protein Sci. 2018 Jan;27(1):293-315. doi: 10.1002/pro.3330. Epub 2017 Nov 27. Protein Sci. 2018. PMID: 29067766 Free PMC article.
A new generation of crystallographic validation tools for the protein data bank.
Read RJ, Adams PD, Arendall WB 3rd, Brunger AT, Emsley P, Joosten RP, Kleywegt GJ, Krissinel EB, L├╝tteke T, Otwinowski Z, Perrakis A, Richardson JS, Sheffler WH, Smith JL, Tickle IJ, Vriend G, Zwart PH. Read RJ, et al. Among authors: arendall wb 3rd. Structure. 2011 Oct 12;19(10):1395-412. doi: 10.1016/j.str.2011.08.006. Structure. 2011. PMID: 22000512 Free PMC article.
MolProbity: all-atom structure validation for macromolecular crystallography.
Chen VB, Arendall WB 3rd, Headd JJ, Keedy DA, Immormino RM, Kapral GJ, Murray LW, Richardson JS, Richardson DC. Chen VB, et al. Among authors: arendall wb 3rd. Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):12-21. doi: 10.1107/S0907444909042073. Epub 2009 Dec 21. Acta Crystallogr D Biol Crystallogr. 2010. PMID: 20057044 Free PMC article.
The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models.
Keedy DA, Williams CJ, Headd JJ, Arendall WB 3rd, Chen VB, Kapral GJ, Gillespie RA, Block JN, Zemla A, Richardson DC, Richardson JS. Keedy DA, et al. Among authors: arendall wb 3rd. Proteins. 2009;77 Suppl 9(Suppl 9):29-49. doi: 10.1002/prot.22551. Proteins. 2009. PMID: 19731372 Free PMC article.
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.
Davis IW, Leaver-Fay A, Chen VB, Block JN, Kapral GJ, Wang X, Murray LW, Arendall WB 3rd, Snoeyink J, Richardson JS, Richardson DC. Davis IW, et al. Among authors: arendall wb 3rd. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W375-83. doi: 10.1093/nar/gkm216. Epub 2007 Apr 22. Nucleic Acids Res. 2007. PMID: 17452350 Free PMC article.
The backrub motion: how protein backbone shrugs when a sidechain dances.
Davis IW, Arendall WB 3rd, Richardson DC, Richardson JS. Davis IW, et al. Among authors: arendall wb 3rd. Structure. 2006 Feb;14(2):265-74. doi: 10.1016/j.str.2005.10.007. Structure. 2006. PMID: 16472746 Free article.
Away from the edge II: in-house Se-SAS phasing with chromium radiation.
Xu H, Yang C, Chen L, Kataeva IA, Tempel W, Lee D, Habel JE, Nguyen D, Pflugrath JW, Ferrara JD, Arendall WB 3rd, Richardson JS, Richardson DC, Liu ZJ, Newton MG, Rose JP, Wang BC. Xu H, et al. Among authors: arendall wb 3rd. Acta Crystallogr D Biol Crystallogr. 2005 Jul;61(Pt 7):960-6. doi: 10.1107/S0907444905010644. Epub 2005 Jun 24. Acta Crystallogr D Biol Crystallogr. 2005. PMID: 15983419
A test of enhancing model accuracy in high-throughput crystallography.
Arendall WB 3rd, Tempel W, Richardson JS, Zhou W, Wang S, Davis IW, Liu ZJ, Rose JP, Carson WM, Luo M, Richardson DC, Wang BC. Arendall WB 3rd, et al. J Struct Funct Genomics. 2005;6(1):1-11. doi: 10.1007/s10969-005-3138-4. J Struct Funct Genomics. 2005. PMID: 15965733
Structural genomics of Pyrococcus furiosus: X-ray crystallography reveals 3D domain swapping in rubrerythrin.
Tempel W, Liu ZJ, Schubot FD, Shah A, Weinberg MV, Jenney FE Jr, Arendall WB 3rd, Adams MW, Richardson JS, Richardson DC, Rose JP, Wang BC. Tempel W, et al. Among authors: arendall wb 3rd. Proteins. 2004 Dec 1;57(4):878-82. doi: 10.1002/prot.20280. Proteins. 2004. PMID: 15468318 No abstract available.
The cis-Pro touch-turn: a rare motif preferred at functional sites.
Videau LL, Arendall WB 3rd, Richardson JS. Videau LL, et al. Among authors: arendall wb 3rd. Proteins. 2004 Aug 1;56(2):298-309. doi: 10.1002/prot.20101. Proteins. 2004. PMID: 15211513
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