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Fiji: an open-source platform for biological-image analysis.
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A. Schindelin J, et al. Nat Methods. 2012 Jun 28;9(7):676-82. doi: 10.1038/nmeth.2019. Nat Methods. 2012. PMID: 22743772 Free PMC article.
BoneJ: Free and extensible bone image analysis in ImageJ.
Doube M, Kłosowski MM, Arganda-Carreras I, Cordelières FP, Dougherty RP, Jackson JS, Schmid B, Hutchinson JR, Shefelbine SJ. Doube M, et al. Bone. 2010 Dec;47(6):1076-9. doi: 10.1016/j.bone.2010.08.023. Epub 2010 Sep 15. Bone. 2010. PMID: 20817052 Free PMC article.
TrakEM2 software for neural circuit reconstruction.
Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ. Cardona A, et al. PLoS One. 2012;7(6):e38011. doi: 10.1371/journal.pone.0038011. Epub 2012 Jun 19. PLoS One. 2012. PMID: 22723842 Free PMC article.
Crowdsourcing the creation of image segmentation algorithms for connectomics.
Arganda-Carreras I, Turaga SC, Berger DR, Cireşan D, Giusti A, Gambardella LM, Schmidhuber J, Laptev D, Dwivedi S, Buhmann JM, Liu T, Seyedhosseini M, Tasdizen T, Kamentsky L, Burget R, Uher V, Tan X, Sun C, Pham TD, Bas E, Uzunbas MG, Cardona A, Schindelin J, Seung HS. Arganda-Carreras I, et al. Front Neuroanat. 2015 Nov 5;9:142. doi: 10.3389/fnana.2015.00142. eCollection 2015. Front Neuroanat. 2015. PMID: 26594156 Free PMC article.
Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy.
Abdeladim L, Matho KS, Clavreul S, Mahou P, Sintes JM, Solinas X, Arganda-Carreras I, Turney SG, Lichtman JW, Chessel A, Bemelmans AP, Loulier K, Supatto W, Livet J, Beaurepaire E. Abdeladim L, et al. Nat Commun. 2019 Apr 10;10(1):1662. doi: 10.1038/s41467-019-09552-9. Nat Commun. 2019. PMID: 30971684 Free PMC article.
38 results