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omiXcore: a web server for prediction of protein interactions with large RNA.
Armaos A, Cirillo D, Gaetano Tartaglia G. Armaos A, et al. Bioinformatics. 2017 Oct 1;33(19):3104-3106. doi: 10.1093/bioinformatics/btx361. Bioinformatics. 2017. PMID: 28637296 Free PMC article.
SUMMARY: Here we introduce omiXcore, a server for calculations of protein binding to large RNAs (> 500 nucleotides). Our webserver allows (i) use of both protein and RNA sequences without size restriction, (ii) pre-compiled library for exploration of human long intergen …
SUMMARY: Here we introduce omiXcore, a server for calculations of protein binding to large RNAs (> 500 nucleotides). Our webserver …
A high-throughput approach to profile RNA structure.
Delli Ponti R, Marti S, Armaos A, Tartaglia GG. Delli Ponti R, et al. Among authors: armaos a. Nucleic Acids Res. 2017 Mar 17;45(5):e35. doi: 10.1093/nar/gkw1094. Nucleic Acids Res. 2017. PMID: 27899588 Free PMC article.
Quantitative predictions of protein interactions with long noncoding RNAs.
Cirillo D, Blanco M, Armaos A, Buness A, Avner P, Guttman M, Cerase A, Tartaglia GG. Cirillo D, et al. Among authors: armaos a. Nat Methods. 2016 Dec 29;14(1):5-6. doi: 10.1038/nmeth.4100. Nat Methods. 2016. PMID: 28032625 No abstract available.
RNAct: Protein-RNA interaction predictions for model organisms with supporting experimental data.
Lang B, Armaos A, Tartaglia GG. Lang B, et al. Among authors: armaos a. Nucleic Acids Res. 2019 Jan 8;47(D1):D601-D606. doi: 10.1093/nar/gky967. Nucleic Acids Res. 2019. PMID: 30445601 Free PMC article.
A Method for RNA Structure Prediction Shows Evidence for Structure in lncRNAs.
Delli Ponti R, Armaos A, Marti S, Tartaglia GG. Delli Ponti R, et al. Among authors: armaos a. Front Mol Biosci. 2018 Dec 3;5:111. doi: 10.3389/fmolb.2018.00111. eCollection 2018. Front Mol Biosci. 2018. PMID: 30560136 Free PMC article.
RNA structure drives interaction with proteins.
Sanchez de Groot N, Armaos A, Graña-Montes R, Alriquet M, Calloni G, Vabulas RM, Tartaglia GG. Sanchez de Groot N, et al. Among authors: armaos a. Nat Commun. 2019 Jul 19;10(1):3246. doi: 10.1038/s41467-019-10923-5. Nat Commun. 2019. PMID: 31324771 Free PMC article.
CROSSalive: a web server for predicting the in vivo structure of RNA molecules.
Ponti RD, Armaos A, Vandelli A, Tartaglia GG. Ponti RD, et al. Among authors: armaos a. Bioinformatics. 2020 Feb 1;36(3):940-941. doi: 10.1093/bioinformatics/btz666. Bioinformatics. 2020. PMID: 31504168
SAMMSON fosters cancer cell fitness by concertedly enhancing mitochondrial and cytosolic translation.
Vendramin R, Verheyden Y, Ishikawa H, Goedert L, Nicolas E, Saraf K, Armaos A, Delli Ponti R, Izumikawa K, Mestdagh P, Lafontaine DLJ, Tartaglia GG, Takahashi N, Marine JC, Leucci E. Vendramin R, et al. Among authors: armaos a. Nat Struct Mol Biol. 2018 Nov;25(11):1035-1046. doi: 10.1038/s41594-018-0143-4. Epub 2018 Oct 29. Nat Struct Mol Biol. 2018. PMID: 30374086 Free PMC article.
The moonlighting RNA-binding activity of cytosolic serine hydroxymethyltransferase contributes to control compartmentalization of serine metabolism.
Guiducci G, Paone A, Tramonti A, Giardina G, Rinaldo S, Bouzidi A, Magnifico MC, Marani M, Menendez JA, Fatica A, Macone A, Armaos A, Tartaglia GG, Contestabile R, Paiardini A, Cutruzzolà F. Guiducci G, et al. Among authors: armaos a. Nucleic Acids Res. 2019 May 7;47(8):4240-4254. doi: 10.1093/nar/gkz129. Nucleic Acids Res. 2019. PMID: 30809670 Free PMC article.
Phase separation drives X-chromosome inactivation: a hypothesis.
Cerase A, Armaos A, Neumayer C, Avner P, Guttman M, Tartaglia GG. Cerase A, et al. Among authors: armaos a. Nat Struct Mol Biol. 2019 May;26(5):331-334. doi: 10.1038/s41594-019-0223-0. Nat Struct Mol Biol. 2019. PMID: 31061525 No abstract available.
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