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Construction of recombinant Nitrosomonas europaea expressing green fluorescent protein in response to co-oxidation of chloroform.
Gvakharia BO, Bottomley PJ, Arp DJ, Sayavedra-Soto LA. Gvakharia BO, et al. Appl Microbiol Biotechnol. 2009 Apr;82(6):1179-85. doi: 10.1007/s00253-009-1914-y. Epub 2009 Feb 27. Appl Microbiol Biotechnol. 2009. PMID: 19247648
Nitrobacter winogradskyi transcriptomic response to low and high ammonium concentrations.
Sayavedra-Soto L, Ferrell R, Dobie M, Mellbye B, Chaplen F, Buchanan A, Chang J, Bottomley P, Arp D. Sayavedra-Soto L, et al. FEMS Microbiol Lett. 2015 Jan;362(3):1-7. doi: 10.1093/femsle/fnu040. Epub 2014 Dec 4. FEMS Microbiol Lett. 2015. PMID: 25673652
Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations.
Qin W, Amin SA, Lundeen RA, Heal KR, Martens-Habbena W, Turkarslan S, Urakawa H, Costa KC, Hendrickson EL, Wang T, Beck DA, Tiquia-Arashiro SM, Taub F, Holmes AD, Vajrala N, Berube PM, Lowe TM, Moffett JW, Devol AH, Baliga NS, Arp DJ, Sayavedra-Soto LA, Hackett M, Armbrust EV, Ingalls AE, Stahl DA. Qin W, et al. Among authors: arp dj. ISME J. 2018 Feb;12(2):508-519. doi: 10.1038/ismej.2017.186. Epub 2017 Oct 20. ISME J. 2018. PMID: 29053148 Free PMC article.
The membrane-associated monooxygenase in the butane-oxidizing Gram-positive bacterium Nocardioides sp. strain CF8 is a novel member of the AMO/PMO family.
Sayavedra-Soto LA, Hamamura N, Liu CW, Kimbrel JA, Chang JH, Arp DJ. Sayavedra-Soto LA, et al. Environ Microbiol Rep. 2011 Jun;3(3):390-6. doi: 10.1111/j.1758-2229.2010.00239.x. Epub 2011 Jan 26. Environ Microbiol Rep. 2011. PMID: 23761285
Nitrification and degradation of halogenated hydrocarbons--a tenuous balance for ammonia-oxidizing bacteria.
Sayavedra-Soto LA, Gvakharia B, Bottomley PJ, Arp DJ, Dolan ME. Sayavedra-Soto LA, et al. Appl Microbiol Biotechnol. 2010 Mar;86(2):435-44. doi: 10.1007/s00253-010-2454-1. Epub 2010 Feb 10. Appl Microbiol Biotechnol. 2010. PMID: 20146060 Review.
Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment.
Norton JM, Klotz MG, Stein LY, Arp DJ, Bottomley PJ, Chain PS, Hauser LJ, Land ML, Larimer FW, Shin MW, Starkenburg SR. Norton JM, et al. Appl Environ Microbiol. 2008 Jun;74(11):3559-72. doi: 10.1128/AEM.02722-07. Epub 2008 Apr 4. Appl Environ Microbiol. 2008. PMID: 18390676 Free PMC article.
Complete genome sequence of Nitrobacter hamburgensis X14 and comparative genomic analysis of species within the genus Nitrobacter.
Starkenburg SR, Larimer FW, Stein LY, Klotz MG, Chain PS, Sayavedra-Soto LA, Poret-Peterson AT, Gentry ME, Arp DJ, Ward B, Bottomley PJ. Starkenburg SR, et al. Appl Environ Microbiol. 2008 May;74(9):2852-63. doi: 10.1128/AEM.02311-07. Epub 2008 Mar 7. Appl Environ Microbiol. 2008. PMID: 18326675 Free PMC article.
Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation.
Stein LY, Arp DJ, Berube PM, Chain PS, Hauser L, Jetten MS, Klotz MG, Larimer FW, Norton JM, Op den Camp HJ, Shin M, Wei X. Stein LY, et al. Environ Microbiol. 2007 Dec;9(12):2993-3007. doi: 10.1111/j.1462-2920.2007.01409.x. Environ Microbiol. 2007. PMID: 17991028
Global transcriptional response of Nitrosomonas europaea to chloroform and chloromethane.
Gvakharia BO, Permina EA, Gelfand MS, Bottomley PJ, Sayavedra-Soto LA, Arp DJ. Gvakharia BO, et al. Appl Environ Microbiol. 2007 May;73(10):3440-5. doi: 10.1128/AEM.02831-06. Epub 2007 Mar 16. Appl Environ Microbiol. 2007. PMID: 17369330 Free PMC article.
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