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2017 1
2018 2
2019 1
2020 2
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Page 1
Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene-based approaches.
Schürch AC, Arredondo-Alonso S, Willems RJL, Goering RV. Schürch AC, et al. Among authors: Arredondo-Alonso S. Clin Microbiol Infect. 2018 Apr;24(4):350-354. doi: 10.1016/j.cmi.2017.12.016. Epub 2018 Jan 5. Clin Microbiol Infect. 2018. PMID: 29309930 Free article. Review.
Plasmids Shaped the Recent Emergence of the Major Nosocomial Pathogen Enterococcus faecium.
Arredondo-Alonso S, Top J, McNally A, Puranen S, Pesonen M, Pensar J, Marttinen P, Braat JC, Rogers MRC, van Schaik W, Kaski S, Willems RJL, Corander J, Schürch AC. Arredondo-Alonso S, et al. mBio. 2020 Feb 11;11(1):e03284-19. doi: 10.1128/mBio.03284-19. mBio. 2020. PMID: 32047136 Free PMC article.
gplas: a comprehensive tool for plasmid analysis using short-read graphs.
Arredondo-Alonso S, Bootsma M, Hein Y, Rogers MRC, Corander J, Willems RJL, Schürch AC. Arredondo-Alonso S, et al. Bioinformatics. 2020 Apr 9:btaa233. doi: 10.1093/bioinformatics/btaa233. Online ahead of print. Bioinformatics. 2020. PMID: 32271863