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Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts.
Doi A, Park IH, Wen B, Murakami P, Aryee MJ, Irizarry R, Herb B, Ladd-Acosta C, Rho J, Loewer S, Miller J, Schlaeger T, Daley GQ, Feinberg AP. Doi A, et al. Among authors: aryee mj. Nat Genet. 2009 Dec;41(12):1350-3. doi: 10.1038/ng.471. Epub 2009 Nov 1. Nat Genet. 2009. PMID: 19881528 Free PMC article.
Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences.
Yegnasubramanian S, Wu Z, Haffner MC, Esopi D, Aryee MJ, Badrinath R, He TL, Morgan JD, Carvalho B, Zheng Q, De Marzo AM, Irizarry RA, Nelson WG. Yegnasubramanian S, et al. Among authors: aryee mj. BMC Genomics. 2011 Jun 13;12:313. doi: 10.1186/1471-2164-12-313. BMC Genomics. 2011. PMID: 21669002 Free PMC article.
A DNA hypermethylation module for the stem/progenitor cell signature of cancer.
Easwaran H, Johnstone SE, Van Neste L, Ohm J, Mosbruger T, Wang Q, Aryee MJ, Joyce P, Ahuja N, Weisenberger D, Collisson E, Zhu J, Yegnasubramanian S, Matsui W, Baylin SB. Easwaran H, et al. Among authors: aryee mj. Genome Res. 2012 May;22(5):837-49. doi: 10.1101/gr.131169.111. Epub 2012 Mar 5. Genome Res. 2012. PMID: 22391556 Free PMC article.
Comprehensive methylome map of lineage commitment from haematopoietic progenitors.
Ji H, Ehrlich LI, Seita J, Murakami P, Doi A, Lindau P, Lee H, Aryee MJ, Irizarry RA, Kim K, Rossi DJ, Inlay MA, Serwold T, Karsunky H, Ho L, Daley GQ, Weissman IL, Feinberg AP. Ji H, et al. Among authors: aryee mj. Nature. 2010 Sep 16;467(7313):338-42. doi: 10.1038/nature09367. Epub 2010 Aug 15. Nature. 2010. PMID: 20720541 Free PMC article.
Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis.
Liu Y, Aryee MJ, Padyukov L, Fallin MD, Hesselberg E, Runarsson A, Reinius L, Acevedo N, Taub M, Ronninger M, Shchetynsky K, Scheynius A, Kere J, Alfredsson L, Klareskog L, Ekström TJ, Feinberg AP. Liu Y, et al. Among authors: aryee mj. Nat Biotechnol. 2013 Feb;31(2):142-7. doi: 10.1038/nbt.2487. Epub 2013 Jan 20. Nat Biotechnol. 2013. PMID: 23334450 Free PMC article.
103 results