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Human postprandial responses to food and potential for precision nutrition.
Berry SE, Valdes AM, Drew DA, Asnicar F, Mazidi M, Wolf J, Capdevila J, Hadjigeorgiou G, Davies R, Al Khatib H, Bonnett C, Ganesh S, Bakker E, Hart D, Mangino M, Merino J, Linenberg I, Wyatt P, Ordovas JM, Gardner CD, Delahanty LM, Chan AT, Segata N, Franks PW, Spector TD. Berry SE, et al. Among authors: Asnicar F. Nat Med. 2020 Jun;26(6):964-973. doi: 10.1038/s41591-020-0934-0. Epub 2020 Jun 11. Nat Med. 2020. PMID: 32528151
[No title available]
PMID: 31224298. Article details are not available.
Strain-level microbial epidemiology and population genomics from shotgun metagenomics.
Scholz M, Ward DV, Pasolli E, Tolio T, Zolfo M, Asnicar F, Truong DT, Tett A, Morrow AL, Segata N. Scholz M, et al. Nat Methods. 2016 May;13(5):435-8. doi: 10.1038/nmeth.3802. Epub 2016 Mar 21. Nat Methods. 2016. PMID: 26999001
Compact graphical representation of phylogenetic data and metadata with GraPhlAn.
Asnicar F, Weingart G, Tickle TL, Huttenhower C, Segata N. Asnicar F, et al. PeerJ. 2015 Jun 18;3:e1029. doi: 10.7717/peerj.1029. eCollection 2015. PeerJ. 2015. PMID: 26157614 Free PMC article.
Detecting contamination in viromes using ViromeQC.
Zolfo M, Pinto F, Asnicar F, Manghi P, Tett A, Bushman FD, Segata N. Zolfo M, et al. Among authors: Asnicar F. Nat Biotechnol. 2019 Dec;37(12):1408-1412. doi: 10.1038/s41587-019-0334-5. Nat Biotechnol. 2019. PMID: 31748692 No abstract available.
Uncovering oral Neisseria tropism and persistence using metagenomic sequencing.
Donati C, Zolfo M, Albanese D, Tin Truong D, Asnicar F, Iebba V, Cavalieri D, Jousson O, De Filippo C, Huttenhower C, Segata N. Donati C, et al. Nat Microbiol. 2016 May 27;1(7):16070. doi: 10.1038/nmicrobiol.2016.70. Nat Microbiol. 2016. PMID: 27572971
Profiling microbial strains in urban environments using metagenomic sequencing data.
Zolfo M, Asnicar F, Manghi P, Pasolli E, Tett A, Segata N. Zolfo M, et al. Biol Direct. 2018 May 9;13(1):9. doi: 10.1186/s13062-018-0211-z. Biol Direct. 2018. PMID: 29743119 Free PMC article.
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation.
Thomas AM, Manghi P, Asnicar F, Pasolli E, Armanini F, Zolfo M, Beghini F, Manara S, Karcher N, Pozzi C, Gandini S, Serrano D, Tarallo S, Francavilla A, Gallo G, Trompetto M, Ferrero G, Mizutani S, Shiroma H, Shiba S, Shibata T, Yachida S, Yamada T, Wirbel J, Schrotz-King P, Ulrich CM, Brenner H, Arumugam M, Bork P, Zeller G, Cordero F, Dias-Neto E, Setubal JC, Tett A, Pardini B, Rescigno M, Waldron L, Naccarati A, Segata N. Thomas AM, et al. Nat Med. 2019 Apr;25(4):667-678. doi: 10.1038/s41591-019-0405-7. Epub 2019 Apr 1. Nat Med. 2019. PMID: 30936548
Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation.
Thomas AM, Manghi P, Asnicar F, Pasolli E, Armanini F, Zolfo M, Beghini F, Manara S, Karcher N, Pozzi C, Gandini S, Serrano D, Tarallo S, Francavilla A, Gallo G, Trompetto M, Ferrero G, Mizutani S, Shiroma H, Shiba S, Shibata T, Yachida S, Yamada T, Wirbel J, Schrotz-King P, Ulrich CM, Brenner H, Arumugam M, Bork P, Zeller G, Cordero F, Dias-Neto E, Setubal JC, Tett A, Pardini B, Rescigno M, Waldron L, Naccarati A, Segata N. Thomas AM, et al. Among authors: Asnicar F. Nat Med. 2019 Dec;25(12):1948. doi: 10.1038/s41591-019-0663-4. Nat Med. 2019. PMID: 31664237
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.
Asnicar F, Thomas AM, Beghini F, Mengoni C, Manara S, Manghi P, Zhu Q, Bolzan M, Cumbo F, May U, Sanders JG, Zolfo M, Kopylova E, Pasolli E, Knight R, Mirarab S, Huttenhower C, Segata N. Asnicar F, et al. Nat Commun. 2020 May 19;11(1):2500. doi: 10.1038/s41467-020-16366-7. Nat Commun. 2020. PMID: 32427907 Free PMC article.
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