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Tractography reproducibility challenge with empirical data (TraCED): The 2017 ISMRM diffusion study group challenge.
Nath V, Schilling KG, Parvathaneni P, Huo Y, Blaber JA, Hainline AE, Barakovic M, Romascano D, Rafael-Patino J, Frigo M, Girard G, Thiran JP, Daducci A, Rowe M, Rodrigues P, Prčkovska V, Aydogan DB, Sun W, Shi Y, Parker WA, Ould Ismail AA, Verma R, Cabeen RP, Toga AW, Newton AT, Wasserthal J, Neher P, Maier-Hein K, Savini G, Palesi F, Kaden E, Wu Y, He J, Feng Y, Paquette M, Rheault F, Sidhu J, Lebel C, Leemans A, Descoteaux M, Dyrby TB, Kang H, Landman BA. Nath V, et al. Among authors: aydogan db. J Magn Reson Imaging. 2020 Jan;51(1):234-249. doi: 10.1002/jmri.26794. Epub 2019 Jun 9. J Magn Reson Imaging. 2020. PMID: 31179595
Limits to anatomical accuracy of diffusion tractography using modern approaches.
Schilling KG, Nath V, Hansen C, Parvathaneni P, Blaber J, Gao Y, Neher P, Aydogan DB, Shi Y, Ocampo-Pineda M, Schiavi S, Daducci A, Girard G, Barakovic M, Rafael-Patino J, Romascano D, Rensonnet G, Pizzolato M, Bates A, Fischi E, Thiran JP, Canales-Rodríguez EJ, Huang C, Zhu H, Zhong L, Cabeen R, Toga AW, Rheault F, Theaud G, Houde JC, Sidhu J, Chamberland M, Westin CF, Dyrby TB, Verma R, Rathi Y, Irfanoglu MO, Thomas C, Pierpaoli C, Descoteaux M, Anderson AW, Landman BA. Schilling KG, et al. Among authors: aydogan db. Neuroimage. 2019 Jan 15;185:1-11. doi: 10.1016/j.neuroimage.2018.10.029. Epub 2018 Oct 11. Neuroimage. 2019. PMID: 30317017 Free PMC article.
Modeling topographic regularity in structural brain connectivity with application to tractogram filtering.
Wang J, Aydogan DB, Varma R, Toga AW, Shi Y. Wang J, et al. Among authors: aydogan db. Neuroimage. 2018 Dec;183:87-98. doi: 10.1016/j.neuroimage.2018.07.068. Epub 2018 Aug 4. Neuroimage. 2018. PMID: 30081193 Free PMC article.
Tracking and validation techniques for topographically organized tractography.
Aydogan DB, Shi Y. Aydogan DB, et al. Neuroimage. 2018 Nov 1;181:64-84. doi: 10.1016/j.neuroimage.2018.06.071. Epub 2018 Jul 2. Neuroimage. 2018. PMID: 29986834 Free PMC article.
When tractography meets tracer injections: a systematic study of trends and variation sources of diffusion-based connectivity.
Aydogan DB, Jacobs R, Dulawa S, Thompson SL, Francois MC, Toga AW, Dong H, Knowles JA, Shi Y. Aydogan DB, et al. Brain Struct Funct. 2018 Jul;223(6):2841-2858. doi: 10.1007/s00429-018-1663-8. Epub 2018 Apr 16. Brain Struct Funct. 2018. PMID: 29663135 Free PMC article.
Topographic Regularity for Tract Filtering in Brain Connectivity.
Wang J, Aydogan DB, Varma R, Toga AW, Shi Y. Wang J, et al. Among authors: aydogan db. Inf Process Med Imaging. 2017 Jun;10265:263-274. doi: 10.1007/978-3-319-59050-9_21. Epub 2017 May 23. Inf Process Med Imaging. 2017. PMID: 28943732 Free PMC article.
Effect of CPAP on sleep spindles in patients with OSA.
Yetkin O, Aydogan D. Yetkin O, et al. Among authors: aydogan d. Respir Physiol Neurobiol. 2018 Jan;247:71-73. doi: 10.1016/j.resp.2017.09.008. Epub 2017 Sep 18. Respir Physiol Neurobiol. 2018. PMID: 28923780
Conversion Discriminative Analysis on Mild Cognitive Impairment Using Multiple Cortical Features from MR Images.
Guo S, Lai C, Wu C, Cen G; Alzheimer's Disease Neuroimaging Initiative. Guo S, et al. Front Aging Neurosci. 2017 May 18;9:146. doi: 10.3389/fnagi.2017.00146. eCollection 2017. Front Aging Neurosci. 2017. PMID: 28572766 Free PMC article.
Probabilistic Tractography for Topographically Organized Connectomes.
Aydogan DB, Shi Y. Aydogan DB, et al. Med Image Comput Comput Assist Interv. 2016 Oct;9900:201-209. doi: 10.1007/978-3-319-46720-7_24. Epub 2016 Oct 2. Med Image Comput Comput Assist Interv. 2016. PMID: 28090602 Free PMC article.
Track Filtering via Iterative Correction of TDI Topology.
Aydogan DB, Shi Y. Aydogan DB, et al. Med Image Comput Comput Assist Interv. 2015 Oct;9349:20-27. doi: 10.1007/978-3-319-24553-9_3. Epub 2015 Nov 18. Med Image Comput Comput Assist Interv. 2015. PMID: 26798847 Free PMC article.
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