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The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation.
McNeil LK, Reich C, Aziz RK, Bartels D, Cohoon M, Disz T, Edwards RA, Gerdes S, Hwang K, Kubal M, Margaryan GR, Meyer F, Mihalo W, Olsen GJ, Olson R, Osterman A, Paarmann D, Paczian T, Parrello B, Pusch GD, Rodionov DA, Shi X, Vassieva O, Vonstein V, Zagnitko O, Xia F, Zinner J, Overbeek R, Stevens R. McNeil LK, et al. Among authors: aziz rk. Nucleic Acids Res. 2007 Jan;35(Database issue):D347-53. doi: 10.1093/nar/gkl947. Epub 2006 Dec 1. Nucleic Acids Res. 2007. PMID: 17145713 Free PMC article.
The RAST Server: rapid annotations using subsystems technology.
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. Aziz RK, et al. BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75. BMC Genomics. 2008. PMID: 18261238 Free PMC article.
Phage Genome Annotation Using the RAST Pipeline.
McNair K, Aziz RK, Pusch GD, Overbeek R, Dutilh BE, Edwards R. McNair K, et al. Among authors: aziz rk. Methods Mol Biol. 2018;1681:231-238. doi: 10.1007/978-1-4939-7343-9_17. Methods Mol Biol. 2018. PMID: 29134599
Pathogen microevolution in high resolution.
Aziz RK, Nizet V. Aziz RK, et al. Sci Transl Med. 2010 Jan 27;2(16):16ps4. doi: 10.1126/scitranslmed.3000713. Sci Transl Med. 2010. PMID: 20371473
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