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Transposable element sequence fragments incorporated into coding and noncoding transcripts modulate the transcriptome of human pluripotent stem cells.
Babarinde IA, Ma G, Li Y, Deng B, Luo Z, Liu H, Abdul MM, Ward C, Chen M, Fu X, Shi L, Duttlinger M, He J, Sun L, Li W, Zhuang Q, Tong G, Frampton J, Cazier JB, Chen J, Jauch R, Esteban MA, Hutchins AP. Babarinde IA, et al. Nucleic Acids Res. 2021 Sep 20;49(16):9132-9153. doi: 10.1093/nar/gkab710. Nucleic Acids Res. 2021. PMID: 34390351 Free PMC article.
JMJD3 acts in tandem with KLF4 to facilitate reprogramming to pluripotency.
Huang Y, Zhang H, Wang L, Tang C, Qin X, Wu X, Pan M, Tang Y, Yang Z, Babarinde IA, Lin R, Ji G, Lai Y, Xu X, Su J, Wen X, Satoh T, Ahmed T, Malik V, Ward C, Volpe G, Guo L, Chen J, Sun L, Li Y, Huang X, Bao X, Gao F, Liu B, Zheng H, Jauch R, Lai L, Pan G, Chen J, Testa G, Akira S, Hu J, Pei D, Hutchins AP, Esteban MA, Qin B. Huang Y, et al. Among authors: babarinde ia. Nat Commun. 2020 Oct 8;11(1):5061. doi: 10.1038/s41467-020-18900-z. Nat Commun. 2020. PMID: 33033262 Free PMC article.
β-Catenin safeguards the ground state of mousepluripotency by strengthening the robustness of the transcriptional apparatus.
Zhang M, Lai Y, Krupalnik V, Guo P, Guo X, Zhou J, Xu Y, Yu Z, Liu L, Jiang A, Li W, Abdul MM, Ma G, Li N, Fu X, Lv Y, Jiang M, Tariq M, Kanwal S, Liu H, Xu X, Zhang H, Huang Y, Wang L, Chen S, Babarinde IA, Luo Z, Wang D, Zhou T, Ward C, He M, Ibañez DP, Li Y, Zhou J, Yuan J, Feng Y, Arumugam K, Di Vicino U, Bao X, Wu G, Schambach A, Wang H, Sun H, Gao F, Qin B, Hutchins AP, Doble BW, Hartmann C, Cosma MP, Qin Y, Xu GL, Chen R, Volpe G, Chen L, Hanna JH, Esteban MA. Zhang M, et al. Among authors: babarinde ia. Sci Adv. 2020 Jul 17;6(29):eaba1593. doi: 10.1126/sciadv.aba1593. eCollection 2020 Jul. Sci Adv. 2020. PMID: 32832621 Free PMC article.
Unified Analysis of Multiple ChIP-Seq Datasets.
Ma G, Babarinde IA, Zhuang Q, Hutchins AP. Ma G, et al. Among authors: babarinde ia. Methods Mol Biol. 2021;2198:451-465. doi: 10.1007/978-1-0716-0876-0_33. Methods Mol Biol. 2021. PMID: 32822050
14 results