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bioassayR: Cross-Target Analysis of Small Molecule Bioactivity.

Backman TW, Girke T. Backman TW, et al. J Chem Inf Model. 2016 Jul 25;56(7):1237-42. doi: 10.1021/acs.jcim.6b00109. Epub 2016 Jul 12. J Chem Inf Model. 2016. PMID: 27367556 Free PMC article.

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Large-scale bioactivity analysis of the small-molecule assayed proteome.

Backman TW, Evans DS, Girke T. Backman TW, et al. PLoS One. 2017 Feb 8;12(2):e0171413. doi: 10.1371/journal.pone.0171413. eCollection 2017. PLoS One. 2017. PMID: 28178331 Free PMC article.

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Chemoinformatic-Guided Engineering of Polyketide Synthases.

Zargar A, Lal R, Valencia L, Wang J, Backman TWH, Cruz-Morales P, Kothari A, Werts M, Wong AR, Bailey CB, Loubat A, Liu Y, Chen Y, Chang S, Benites VT, Hernández AC, Barajas JF, Thompson MG, Barcelos C, Anayah R, Martin HG, Mukhopadhyay A, Petzold CJ, Baidoo EEK, Katz L, Keasling JD. Zargar A, et al. Among authors: backman twh. J Am Chem Soc. 2020 Jun 3;142(22):9896-9901. doi: 10.1021/jacs.0c02549. Epub 2020 May 18. J Am Chem Soc. 2020. PMID: 32412752 Free article.

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Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases.

Barajas JF, McAndrew RP, Thompson MG, Backman TWH, Pang B, de Rond T, Pereira JH, Benites VT, Martín HG, Baidoo EEK, Hillson NJ, Adams PD, Keasling JD. Barajas JF, et al. Among authors: backman twh. J Ind Microbiol Biotechnol. 2019 Aug;46(8):1225-1235. doi: 10.1007/s10295-019-02189-z. Epub 2019 May 21. J Ind Microbiol Biotechnol. 2019. PMID: 31115703 Free PMC article.

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Synthetic biology of polyketide synthases.

Yuzawa S, Backman TWH, Keasling JD, Katz L. Yuzawa S, et al. Among authors: backman twh. J Ind Microbiol Biotechnol. 2018 Jul;45(7):621-633. doi: 10.1007/s10295-018-2021-9. Epub 2018 Feb 9. J Ind Microbiol Biotechnol. 2018. PMID: 29423743

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Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for ¹³C Metabolic Flux Analysis.

Backman TWH, Ando D, Singh J, Keasling JD, García Martín H. Backman TWH, et al. Metabolites. 2018 Jan 4;8(1):3. doi: 10.3390/metabo8010003. Metabolites. 2018. PMID: 29300340 Free PMC article.

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ClusterCAD: a computational platform for type I modular polyketide synthase design.

Eng CH, Backman TWH, Bailey CB, Magnan C, García Martín H, Katz L, Baldi P, Keasling JD. Eng CH, et al. Among authors: backman twh. Nucleic Acids Res. 2018 Jan 4;46(D1):D509-D515. doi: 10.1093/nar/gkx893. Nucleic Acids Res. 2018. PMID: 29040649 Free PMC article.

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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization.

Morrell WC, Birkel GW, Forrer M, Lopez T, Backman TWH, Dussault M, Petzold CJ, Baidoo EEK, Costello Z, Ando D, Alonso-Gutierrez J, George KW, Mukhopadhyay A, Vaino I, Keasling JD, Adams PD, Hillson NJ, Garcia Martin H. Morrell WC, et al. Among authors: backman twh. ACS Synth Biol. 2017 Dec 15;6(12):2248-2259. doi: 10.1021/acssynbio.7b00204. Epub 2017 Sep 8. ACS Synth Biol. 2017. PMID: 28826210 Free article.

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Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism.

Birkel GW, Ghosh A, Kumar VS, Weaver D, Ando D, Backman TWH, Arkin AP, Keasling JD, Martín HG. Birkel GW, et al. Among authors: backman twh. BMC Bioinformatics. 2017 Apr 18;18(1):219. doi: 10.1186/s12859-017-1631-y. BMC Bioinformatics. 2017. PMID: 28420344 Free PMC article. No abstract available.

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The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism.

Birkel GW, Ghosh A, Kumar VS, Weaver D, Ando D, Backman TWH, Arkin AP, Keasling JD, Martín HG. Birkel GW, et al. Among authors: backman twh. BMC Bioinformatics. 2017 Apr 5;18(1):205. doi: 10.1186/s12859-017-1615-y. BMC Bioinformatics. 2017. PMID: 28381205 Free PMC article.

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