Bacolla A - Search Results

1

Translocation and deletion breakpoints in cancer genomes are associated with potential non-B DNA-forming sequences.

Bacolla A, Tainer JA, Vasquez KM, Cooper DN. Bacolla A, et al. Nucleic Acids Res. 2016 Jul 8;44(12):5673-88. doi: 10.1093/nar/gkw261. Epub 2016 Apr 15. Nucleic Acids Res. 2016. PMID: 27084947 Free PMC article.

2

Breakpoints of gross deletions coincide with non-B DNA conformations.

Bacolla A, Jaworski A, Larson JE, Jakupciak JP, Chuzhanova N, Abeysinghe SS, O'Connell CD, Cooper DN, Wells RD. Bacolla A, et al. Proc Natl Acad Sci U S A. 2004 Sep 28;101(39):14162-7. doi: 10.1073/pnas.0405974101. Epub 2004 Sep 17. Proc Natl Acad Sci U S A. 2004. PMID: 15377784 Free PMC article.

3

Long homopurine*homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region.

Bacolla A, Collins JR, Gold B, Chuzhanova N, Yi M, Stephens RM, Stefanov S, Olsh A, Jakupciak JP, Dean M, Lempicki RA, Cooper DN, Wells RD. Bacolla A, et al. Nucleic Acids Res. 2006 May 19;34(9):2663-75. doi: 10.1093/nar/gkl354. Print 2006. Nucleic Acids Res. 2006. PMID: 16714445 Free PMC article.

4

Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties.

Bacolla A, Larson JE, Collins JR, Li J, Milosavljevic A, Stenson PD, Cooper DN, Wells RD. Bacolla A, et al. Genome Res. 2008 Oct;18(10):1545-53. doi: 10.1101/gr.078303.108. Epub 2008 Aug 7. Genome Res. 2008. PMID: 18687880 Free PMC article.

5

Non-B DNA conformations as determinants of mutagenesis and human disease.

Bacolla A, Wells RD. Bacolla A, et al. Mol Carcinog. 2009 Apr;48(4):273-85. doi: 10.1002/mc.20507. Mol Carcinog. 2009. PMID: 19306308 Review.

6

Gene conversion causing human inherited disease: evidence for involvement of non-B-DNA-forming sequences and recombination-promoting motifs in DNA breakage and repair.

Chuzhanova N, Chen JM, Bacolla A, Patrinos GP, Férec C, Wells RD, Cooper DN. Chuzhanova N, et al. Among authors: bacolla a. Hum Mutat. 2009 Aug;30(8):1189-98. doi: 10.1002/humu.21020. Hum Mutat. 2009. PMID: 19431182 Free PMC article.

7

Cruciform-forming inverted repeats appear to have mediated many of the microinversions that distinguish the human and chimpanzee genomes.

Kolb J, Chuzhanova NA, Högel J, Vasquez KM, Cooper DN, Bacolla A, Kehrer-Sawatzki H. Kolb J, et al. Among authors: bacolla a. Chromosome Res. 2009;17(4):469-83. doi: 10.1007/s10577-009-9039-9. Epub 2009 May 28. Chromosome Res. 2009. PMID: 19475482

8

Non-B DNA structure-induced genetic instability and evolution.

Zhao J, Bacolla A, Wang G, Vasquez KM. Zhao J, et al. Among authors: bacolla a. Cell Mol Life Sci. 2010 Jan;67(1):43-62. doi: 10.1007/s00018-009-0131-2. Epub 2009 Sep 1. Cell Mol Life Sci. 2010. PMID: 19727556 Free PMC article. Review.

9

Human DHX9 helicase unwinds triple-helical DNA structures.

Jain A, Bacolla A, Chakraborty P, Grosse F, Vasquez KM. Jain A, et al. Among authors: bacolla a. Biochemistry. 2010 Aug 24;49(33):6992-9. doi: 10.1021/bi100795m. Biochemistry. 2010. PMID: 20669935 Free PMC article.

10

Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes.

Cer RZ, Bruce KH, Mudunuri US, Yi M, Volfovsky N, Luke BT, Bacolla A, Collins JR, Stephens RM. Cer RZ, et al. Among authors: bacolla a. Nucleic Acids Res. 2011 Jan;39(Database issue):D383-91. doi: 10.1093/nar/gkq1170. Epub 2010 Nov 21. Nucleic Acids Res. 2011. PMID: 21097885 Free PMC article.

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