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The BioPAX Validator.
Rodchenkov I, Demir E, Sander C, Bader GD. Rodchenkov I, et al. Among authors: bader gd. Bioinformatics. 2013 Oct 15;29(20):2659-60. doi: 10.1093/bioinformatics/btt452. Epub 2013 Aug 5. Bioinformatics. 2013. PMID: 23918249 Free PMC article.
Pathguide: a pathway resource list.
Bader GD, Cary MP, Sander C. Bader GD, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D504-6. doi: 10.1093/nar/gkj126. Nucleic Acids Res. 2006. PMID: 16381921 Free PMC article.
NetMatch: a Cytoscape plugin for searching biological networks.
Ferro A, Giugno R, Pigola G, Pulvirenti A, Skripin D, Bader GD, Shasha D. Ferro A, et al. Among authors: bader gd. Bioinformatics. 2007 Apr 1;23(7):910-2. doi: 10.1093/bioinformatics/btm032. Epub 2007 Feb 3. Bioinformatics. 2007. PMID: 17277332
Cytoscape ESP: simple search of complex biological networks.
Ashkenazi M, Bader GD, Kuchinsky A, Moshelion M, States DJ. Ashkenazi M, et al. Among authors: bader gd. Bioinformatics. 2008 Jun 15;24(12):1465-6. doi: 10.1093/bioinformatics/btn208. Epub 2008 Apr 28. Bioinformatics. 2008. PMID: 18445605 Free PMC article.
Exploring biological networks with Cytoscape software.
Yeung N, Cline MS, Kuchinsky A, Smoot ME, Bader GD. Yeung N, et al. Among authors: bader gd. Curr Protoc Bioinformatics. 2008 Sep;Chapter 8:Unit 8.13. doi: 10.1002/0471250953.bi0813s23. Curr Protoc Bioinformatics. 2008. PMID: 18819078
DRYGIN: a database of quantitative genetic interaction networks in yeast.
Koh JL, Ding H, Costanzo M, Baryshnikova A, Toufighi K, Bader GD, Myers CL, Andrews BJ, Boone C. Koh JL, et al. Among authors: bader gd. Nucleic Acids Res. 2010 Jan;38(Database issue):D502-7. doi: 10.1093/nar/gkp820. Epub 2009 Oct 30. Nucleic Acids Res. 2010. PMID: 19880385 Free PMC article.
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function.
Warde-Farley D, Donaldson SL, Comes O, Zuberi K, Badrawi R, Chao P, Franz M, Grouios C, Kazi F, Lopes CT, Maitland A, Mostafavi S, Montojo J, Shao Q, Wright G, Bader GD, Morris Q. Warde-Farley D, et al. Among authors: bader gd. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W214-20. doi: 10.1093/nar/gkq537. Nucleic Acids Res. 2010. PMID: 20576703 Free PMC article.
275 results