Bader JS - Search Results

1

Global synthetic-lethality analysis and yeast functional profiling.

Ooi SL, Pan X, Peyser BD, Ye P, Meluh PB, Yuan DS, Irizarry RA, Bader JS, Spencer FA, Boeke JD. Ooi SL, et al. Among authors: bader js. Trends Genet. 2006 Jan;22(1):56-63. doi: 10.1016/j.tig.2005.11.003. Epub 2005 Nov 23. Trends Genet. 2006. PMID: 16309778 Review.

2

A robust toolkit for functional profiling of the yeast genome.

Pan X, Yuan DS, Xiang D, Wang X, Sookhai-Mahadeo S, Bader JS, Hieter P, Spencer F, Boeke JD. Pan X, et al. Among authors: bader js. Mol Cell. 2004 Nov 5;16(3):487-96. doi: 10.1016/j.molcel.2004.09.035. Mol Cell. 2004. PMID: 15525520 Free article.

3

Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast.

Ye P, Peyser BD, Spencer FA, Bader JS. Ye P, et al. Among authors: bader js. BMC Bioinformatics. 2005 Nov 9;6:270. doi: 10.1186/1471-2105-6-270. BMC Bioinformatics. 2005. PMID: 16283923 Free PMC article.

4

Genetic Interaction Motif Finding by expectation maximization--a novel statistical model for inferring gene modules from synthetic lethality.

Qi Y, Ye P, Bader JS. Qi Y, et al. Among authors: bader js. BMC Bioinformatics. 2005 Dec 6;6:288. doi: 10.1186/1471-2105-6-288. BMC Bioinformatics. 2005. PMID: 16332255 Free PMC article.

5

A DNA integrity network in the yeast Saccharomyces cerevisiae.

Pan X, Ye P, Yuan DS, Wang X, Bader JS, Boeke JD. Pan X, et al. Among authors: bader js. Cell. 2006 Mar 10;124(5):1069-81. doi: 10.1016/j.cell.2005.12.036. Epub 2006 Feb 16. Cell. 2006. PMID: 16487579 Free article.

6

Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets.

Gandhi TK, Zhong J, Mathivanan S, Karthick L, Chandrika KN, Mohan SS, Sharma S, Pinkert S, Nagaraju S, Periaswamy B, Mishra G, Nandakumar K, Shen B, Deshpande N, Nayak R, Sarker M, Boeke JD, Parmigiani G, Schultz J, Bader JS, Pandey A. Gandhi TK, et al. Among authors: bader js. Nat Genet. 2006 Mar;38(3):285-93. doi: 10.1038/ng1747. Nat Genet. 2006. PMID: 16501559

7

Gene function prediction from congruent synthetic lethal interactions in yeast.

Ye P, Peyser BD, Pan X, Boeke JD, Spencer FA, Bader JS. Ye P, et al. Among authors: bader js. Mol Syst Biol. 2005;1:2005.0026. doi: 10.1038/msb4100034. Epub 2005 Nov 22. Mol Syst Biol. 2005. PMID: 16729061 Free PMC article.

8

A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation.

Lin YY, Qi Y, Lu JY, Pan X, Yuan DS, Zhao Y, Bader JS, Boeke JD. Lin YY, et al. Among authors: bader js. Genes Dev. 2008 Aug 1;22(15):2062-74. doi: 10.1101/gad.1679508. Genes Dev. 2008. PMID: 18676811 Free PMC article.

9

Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants.

Dai J, Hyland EM, Yuan DS, Huang H, Bader JS, Boeke JD. Dai J, et al. Among authors: bader js. Cell. 2008 Sep 19;134(6):1066-78. doi: 10.1016/j.cell.2008.07.019. Cell. 2008. PMID: 18805098 Free PMC article.

10

Finding friends and enemies in an enemies-only network: a graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions.

Qi Y, Suhail Y, Lin YY, Boeke JD, Bader JS. Qi Y, et al. Among authors: bader js. Genome Res. 2008 Dec;18(12):1991-2004. doi: 10.1101/gr.077693.108. Epub 2008 Oct 2. Genome Res. 2008. PMID: 18832443 Free PMC article.

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