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93 results
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HMMpTM: improving transmembrane protein topology prediction using phosphorylation and glycosylation site prediction.
Tsaousis GN, Bagos PG, Hamodrakas SJ. Tsaousis GN, et al. Among authors: bagos pg. Biochim Biophys Acta. 2014 Feb;1844(2):316-22. doi: 10.1016/j.bbapap.2013.11.001. Epub 2013 Nov 10. Biochim Biophys Acta. 2014. PMID: 24225132
A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins.
Bagos PG, Liakopoulos TD, Spyropoulos IC, Hamodrakas SJ. Bagos PG, et al. BMC Bioinformatics. 2004 Mar 15;5:29. doi: 10.1186/1471-2105-5-29. BMC Bioinformatics. 2004. PMID: 15070403 Free PMC article.
TMRPres2D: high quality visual representation of transmembrane protein models.
Spyropoulos IC, Liakopoulos TD, Bagos PG, Hamodrakas SJ. Spyropoulos IC, et al. Among authors: bagos pg. Bioinformatics. 2004 Nov 22;20(17):3258-60. doi: 10.1093/bioinformatics/bth358. Epub 2004 Jun 16. Bioinformatics. 2004. PMID: 15201184
PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins.
Bagos PG, Liakopoulos TD, Spyropoulos IC, Hamodrakas SJ. Bagos PG, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W400-4. doi: 10.1093/nar/gkh417. Nucleic Acids Res. 2004. PMID: 15215419 Free PMC article.
A database for G proteins and their interaction with GPCRs.
Elefsinioti AL, Bagos PG, Spyropoulos IC, Hamodrakas SJ. Elefsinioti AL, et al. Among authors: bagos pg. BMC Bioinformatics. 2004 Dec 24;5:208. doi: 10.1186/1471-2105-5-208. BMC Bioinformatics. 2004. PMID: 15619328 Free PMC article.
Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.
Bagos PG, Liakopoulos TD, Hamodrakas SJ. Bagos PG, et al. BMC Bioinformatics. 2005 Jan 12;6:7. doi: 10.1186/1471-2105-6-7. BMC Bioinformatics. 2005. PMID: 15647112 Free PMC article.
A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models.
Sgourakis NG, Bagos PG, Papasaikas PK, Hamodrakas SJ. Sgourakis NG, et al. Among authors: bagos pg. BMC Bioinformatics. 2005 Apr 22;6:104. doi: 10.1186/1471-2105-6-104. BMC Bioinformatics. 2005. PMID: 15847681 Free PMC article.
Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks.
Sgourakis NG, Bagos PG, Hamodrakas SJ. Sgourakis NG, et al. Among authors: bagos pg. Bioinformatics. 2005 Nov 15;21(22):4101-6. doi: 10.1093/bioinformatics/bti679. Epub 2005 Sep 20. Bioinformatics. 2005. PMID: 16174684
Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins.
Bagos PG, Liakopoulos TD, Hamodrakas SJ. Bagos PG, et al. BMC Bioinformatics. 2006 Apr 5;7:189. doi: 10.1186/1471-2105-7-189. BMC Bioinformatics. 2006. PMID: 16597327 Free PMC article.
PredSL: a tool for the N-terminal sequence-based prediction of protein subcellular localization.
Petsalaki EI, Bagos PG, Litou ZI, Hamodrakas SJ. Petsalaki EI, et al. Among authors: bagos pg. Genomics Proteomics Bioinformatics. 2006 Feb;4(1):48-55. doi: 10.1016/S1672-0229(06)60016-8. Genomics Proteomics Bioinformatics. 2006. PMID: 16689702 Free PMC article.
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