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367 results
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Using entropy maximization to understand the determinants of structural dynamics beyond native contact topology.
Lezon TR, Bahar I. Lezon TR, et al. Among authors: bahar i. PLoS Comput Biol. 2010 Jun 17;6(6):e1000816. doi: 10.1371/journal.pcbi.1000816. PLoS Comput Biol. 2010. PMID: 20585542 Free PMC article.
Vibrational dynamics of transfer RNAs: comparison of the free and synthetase-bound forms.
Bahar I, Jernigan RL. Bahar I, et al. J Mol Biol. 1998 Sep 4;281(5):871-84. doi: 10.1006/jmbi.1998.1978. J Mol Biol. 1998. PMID: 9719641
Dynamics of large proteins through hierarchical levels of coarse-grained structures.
Doruker P, Jernigan RL, Bahar I. Doruker P, et al. Among authors: bahar i. J Comput Chem. 2002 Jan 15;23(1):119-27. doi: 10.1002/jcc.1160. J Comput Chem. 2002. PMID: 11913377
Fast-folding protein kinetics, hidden intermediates, and the sequential stabilization model.
Ozkan SB, Dill KA, Bahar I. Ozkan SB, et al. Among authors: bahar i. Protein Sci. 2002 Aug;11(8):1958-70. doi: 10.1110/ps.0207102. Protein Sci. 2002. PMID: 12142450 Free PMC article.
Inhibitor binding alters the directions of domain motions in HIV-1 reverse transcriptase.
Temiz NA, Bahar I. Temiz NA, et al. Among authors: bahar i. Proteins. 2002 Oct 1;49(1):61-70. doi: 10.1002/prot.10183. Proteins. 2002. PMID: 12211016
Computing the transition state populations in simple protein models.
Ozkan SB, Dill KA, Bahar I. Ozkan SB, et al. Among authors: bahar i. Biopolymers. 2003 Jan;68(1):35-46. doi: 10.1002/bip.10280. Biopolymers. 2003. PMID: 12579578
The origin and extent of coarse-grained regularities in protein internal packing.
Bagci Z, Kloczkowski A, Jernigan RL, Bahar I. Bagci Z, et al. Among authors: bahar i. Proteins. 2003 Oct 1;53(1):56-67. doi: 10.1002/prot.10435. Proteins. 2003. PMID: 12945049
Allosteric changes in protein structure computed by a simple mechanical model: hemoglobin T<-->R2 transition.
Xu C, Tobi D, Bahar I. Xu C, et al. Among authors: bahar i. J Mol Biol. 2003 Oct 10;333(1):153-68. doi: 10.1016/j.jmb.2003.08.027. J Mol Biol. 2003. PMID: 14516750
Identification of core amino acids stabilizing rhodopsin.
Rader AJ, Anderson G, Isin B, Khorana HG, Bahar I, Klein-Seetharaman J. Rader AJ, et al. Among authors: bahar i. Proc Natl Acad Sci U S A. 2004 May 11;101(19):7246-51. doi: 10.1073/pnas.0401429101. Epub 2004 May 3. Proc Natl Acad Sci U S A. 2004. PMID: 15123809 Free PMC article.
Mining frequent patterns in protein structures: a study of protease families.
Chen SC, Bahar I. Chen SC, et al. Among authors: bahar i. Bioinformatics. 2004 Aug 4;20 Suppl 1(Suppl 1):i77-85. doi: 10.1093/bioinformatics/bth912. Bioinformatics. 2004. PMID: 15262784 Free PMC article.
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