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373 results
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Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential.
Bahar I, Atilgan AR, Erman B. Bahar I, et al. Fold Des. 1997;2(3):173-81. doi: 10.1016/S1359-0278(97)00024-2. Fold Des. 1997. PMID: 9218955
ClustENM: ENM-Based Sampling of Essential Conformational Space at Full Atomic Resolution.
Kurkcuoglu Z, Bahar I, Doruker P. Kurkcuoglu Z, et al. Among authors: bahar i. J Chem Theory Comput. 2016 Sep 13;12(9):4549-62. doi: 10.1021/acs.jctc.6b00319. Epub 2016 Aug 18. J Chem Theory Comput. 2016. PMID: 27494296 Free PMC article.
Adaptability of protein structures to enable functional interactions and evolutionary implications.
Haliloglu T, Bahar I. Haliloglu T, et al. Among authors: bahar i. Curr Opin Struct Biol. 2015 Dec;35:17-23. doi: 10.1016/j.sbi.2015.07.007. Epub 2015 Aug 6. Curr Opin Struct Biol. 2015. PMID: 26254902 Free PMC article. Review.
Structure-Encoded Global Motions and Their Role in Mediating Protein-Substrate Interactions.
Bahar I, Cheng MH, Lee JY, Kaya C, Zhang S. Bahar I, et al. Biophys J. 2015 Sep 15;109(6):1101-9. doi: 10.1016/j.bpj.2015.06.004. Epub 2015 Jul 2. Biophys J. 2015. PMID: 26143655 Free PMC article. Review.
Coupling between catalytic loop motions and enzyme global dynamics.
Kurkcuoglu Z, Bakan A, Kocaman D, Bahar I, Doruker P. Kurkcuoglu Z, et al. Among authors: bahar i. PLoS Comput Biol. 2012;8(9):e1002705. doi: 10.1371/journal.pcbi.1002705. Epub 2012 Sep 27. PLoS Comput Biol. 2012. PMID: 23028297 Free PMC article.
On the functional significance of soft modes predicted by coarse-grained models for membrane proteins.
Bahar I. Bahar I. J Gen Physiol. 2010 Jun;135(6):563-73. doi: 10.1085/jgp.200910368. J Gen Physiol. 2010. PMID: 20513758 Free PMC article. No abstract available.
Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins.
Bahar I, Lezon TR, Bakan A, Shrivastava IH. Bahar I, et al. Chem Rev. 2010 Mar 10;110(3):1463-97. doi: 10.1021/cr900095e. Chem Rev. 2010. PMID: 19785456 Free PMC article. Review. No abstract available.
Coarse-grained normal mode analysis in structural biology.
Bahar I, Rader AJ. Bahar I, et al. Curr Opin Struct Biol. 2005 Oct;15(5):586-92. doi: 10.1016/j.sbi.2005.08.007. Curr Opin Struct Biol. 2005. PMID: 16143512 Free PMC article. Review.
iGNM 2.0: the Gaussian network model database for biomolecular structural dynamics.
Li H, Chang YY, Yang LW, Bahar I. Li H, et al. Among authors: bahar i. Nucleic Acids Res. 2016 Jan 4;44(D1):D415-22. doi: 10.1093/nar/gkv1236. Epub 2015 Nov 17. Nucleic Acids Res. 2016. PMID: 26582920 Free PMC article.
Global dynamics of proteins: bridging between structure and function.
Bahar I, Lezon TR, Yang LW, Eyal E. Bahar I, et al. Annu Rev Biophys. 2010;39:23-42. doi: 10.1146/annurev.biophys.093008.131258. Annu Rev Biophys. 2010. PMID: 20192781 Free PMC article. Review.
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