Baker D - Search Results

1

Protein structure prediction and analysis using the Robetta server.

Kim DE, Chivian D, Baker D. Kim DE, et al. Among authors: baker d. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W526-31. doi: 10.1093/nar/gkh468. Nucleic Acids Res. 2004. PMID: 15215442 Free PMC article.

2

Accurate computer-based design of a new backbone conformation in the second turn of protein L.

Kuhlman B, O'Neill JW, Kim DE, Zhang KY, Baker D. Kuhlman B, et al. Among authors: baker d. J Mol Biol. 2002 Jan 18;315(3):471-7. doi: 10.1006/jmbi.2001.5229. J Mol Biol. 2002. PMID: 11786026

3

Distributions of beta sheets in proteins with application to structure prediction.

Ruczinski I, Kooperberg C, Bonneau R, Baker D. Ruczinski I, et al. Among authors: baker d. Proteins. 2002 Jul 1;48(1):85-97. doi: 10.1002/prot.10123. Proteins. 2002. PMID: 12012340

4

Protein structure prediction in 2002.

Schonbrun J, Wedemeyer WJ, Baker D. Schonbrun J, et al. Among authors: baker d. Curr Opin Struct Biol. 2002 Jun;12(3):348-54. doi: 10.1016/s0959-440x(02)00336-6. Curr Opin Struct Biol. 2002. PMID: 12127454 Review.

5

Contact order and ab initio protein structure prediction.

Bonneau R, Ruczinski I, Tsai J, Baker D. Bonneau R, et al. Among authors: baker d. Protein Sci. 2002 Aug;11(8):1937-44. doi: 10.1110/ps.3790102. Protein Sci. 2002. PMID: 12142448 Free PMC article.

6

De novo prediction of three-dimensional structures for major protein families.

Bonneau R, Strauss CE, Rohl CA, Chivian D, Bradley P, Malmström L, Robertson T, Baker D. Bonneau R, et al. Among authors: baker d. J Mol Biol. 2002 Sep 6;322(1):65-78. doi: 10.1016/s0022-2836(02)00698-8. J Mol Biol. 2002. PMID: 12215415

7

Evaluation of structural and evolutionary contributions to deleterious mutation prediction.

Saunders CT, Baker D. Saunders CT, et al. Among authors: baker d. J Mol Biol. 2002 Sep 27;322(4):891-901. doi: 10.1016/s0022-2836(02)00813-6. J Mol Biol. 2002. PMID: 12270722

8

A simple physical model for binding energy hot spots in protein-protein complexes.

Kortemme T, Baker D. Kortemme T, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14116-21. doi: 10.1073/pnas.202485799. Epub 2002 Oct 15. Proc Natl Acad Sci U S A. 2002. PMID: 12381794 Free PMC article.

9

Design, activity, and structure of a highly specific artificial endonuclease.

Chevalier BS, Kortemme T, Chadsey MS, Baker D, Monnat RJ, Stoddard BL. Chevalier BS, et al. Among authors: baker d. Mol Cell. 2002 Oct;10(4):895-905. doi: 10.1016/s1097-2765(02)00690-1. Mol Cell. 2002. PMID: 12419232

10

Crystal structures and increased stabilization of the protein G variants with switched folding pathways NuG1 and NuG2.

Nauli S, Kuhlman B, Le Trong I, Stenkamp RE, Teller D, Baker D. Nauli S, et al. Among authors: baker d. Protein Sci. 2002 Dec;11(12):2924-31. doi: 10.1110/ps.0216902. Protein Sci. 2002. PMID: 12441390 Free PMC article.

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