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ARED 2.0: an update of AU-rich element mRNA database.
Bakheet T, Williams BR, Khabar KS. Bakheet T, et al. Nucleic Acids Res. 2003 Jan 1;31(1):421-3. doi: 10.1093/nar/gkg023. Nucleic Acids Res. 2003. PMID: 12520039 Free PMC article.
ARED: human AU-rich element-containing mRNA database reveals an unexpectedly diverse functional repertoire of encoded proteins.
Bakheet T, Frevel M, Williams BR, Greer W, Khabar KS. Bakheet T, et al. Nucleic Acids Res. 2001 Jan 1;29(1):246-54. doi: 10.1093/nar/29.1.246. Nucleic Acids Res. 2001. PMID: 11125104 Free PMC article.
An integrated computational and laboratory approach for selective amplification of mRNAs containing the adenylate uridylate-rich element consensus sequence.
Khabar KS, Dhalla M, Bakheet T, Sy C, al-Haj L. Khabar KS, et al. Among authors: bakheet t. Genome Res. 2002 Jun;12(6):985-95. doi: 10.1101/gr.204902. Genome Res. 2002. PMID: 12045152 Free PMC article.
Selection of AU-rich transiently expressed sequences: reversal of cDNA abundance.
Khabar KS, Dhalla M, Al-Haj L, Bakheet T, Sy C, Naemmuddin M. Khabar KS, et al. Among authors: bakheet t. RNA. 2004 Apr;10(4):747-53. doi: 10.1261/rna.5121704. RNA. 2004. PMID: 15037783 Free PMC article.
AU-rich transient response transcripts in the human genome: expressed sequence tag clustering and gene discovery approach.
Khabar KS, Bakheet T, Williams BR. Khabar KS, et al. Among authors: bakheet t. Genomics. 2005 Feb;85(2):165-75. doi: 10.1016/j.ygeno.2004.10.004. Genomics. 2005. PMID: 15676275
ARED 3.0: the large and diverse AU-rich transcriptome.
Bakheet T, Williams BR, Khabar KS. Bakheet T, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D111-4. doi: 10.1093/nar/gkj052. Nucleic Acids Res. 2006. PMID: 16381826 Free PMC article.
Systematic Analysis of AU-Rich Element Expression in Cancer Reveals Common Functional Clusters Regulated by Key RNA-Binding Proteins.
Hitti E, Bakheet T, Al-Souhibani N, Moghrabi W, Al-Yahya S, Al-Ghamdi M, Al-Saif M, Shoukri MM, Lánczky A, Grépin R, Győrffy B, Pagès G, Khabar KS. Hitti E, et al. Among authors: bakheet t. Cancer Res. 2016 Jul 15;76(14):4068-80. doi: 10.1158/0008-5472.CAN-15-3110. Epub 2016 May 17. Cancer Res. 2016. PMID: 27197193 Free article.
ARED-Plus: an updated and expanded database of AU-rich element-containing mRNAs and pre-mRNAs.
Bakheet T, Hitti E, Khabar KSA. Bakheet T, et al. Nucleic Acids Res. 2018 Jan 4;46(D1):D218-D220. doi: 10.1093/nar/gkx975. Nucleic Acids Res. 2018. PMID: 29077946 Free PMC article.
The AU-rich element landscape across human transcriptome reveals a large proportion in introns and regulation by ELAVL1/HuR.
Bakheet T, Hitti E, Al-Saif M, Moghrabi WN, Khabar KSA. Bakheet T, et al. Biochim Biophys Acta Gene Regul Mech. 2018 Feb;1861(2):167-177. doi: 10.1016/j.bbagrm.2017.12.006. Epub 2018 Feb 2. Biochim Biophys Acta Gene Regul Mech. 2018. PMID: 29413897 Free article.
Patterns of coordinate down-regulation of ARE-containing transcripts following immune cell activation.
Raghavan A, Dhalla M, Bakheet T, Ogilvie RL, Vlasova IA, Khabar KS, Williams BR, Bohjanen PR. Raghavan A, et al. Among authors: bakheet t. Genomics. 2004 Dec;84(6):1002-13. doi: 10.1016/j.ygeno.2004.08.007. Genomics. 2004. PMID: 15533717
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