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The many faces of the helix-turn-helix domain: transcription regulation and beyond.
Aravind L, Anantharaman V, Balaji S, Babu MM, Iyer LM. Aravind L, et al. Among authors: balaji s. FEMS Microbiol Rev. 2005 Apr;29(2):231-62. doi: 10.1016/j.femsre.2004.12.008. FEMS Microbiol Rev. 2005. PMID: 15808743 Review.
Reconstructing the ubiquitin network: cross-talk with other systems and identification of novel functions.
Venancio TM, Balaji S, Iyer LM, Aravind L. Venancio TM, et al. Among authors: balaji s. Genome Biol. 2009;10(3):R33. doi: 10.1186/gb-2009-10-3-r33. Epub 2009 Mar 30. Genome Biol. 2009. PMID: 19331687 Free PMC article.
HPC2 and ubinuclein define a novel family of histone chaperones conserved throughout eukaryotes.
Balaji S, Iyer LM, Aravind L. Balaji S, et al. Mol Biosyst. 2009 Mar;5(3):269-75. doi: 10.1039/b816424j. Epub 2009 Jan 21. Mol Biosyst. 2009. PMID: 19225618 Free PMC article.
General trends in the evolution of prokaryotic transcriptional regulatory networks.
Babu MM, Balaji S, Aravind L. Babu MM, et al. Among authors: balaji s. Genome Dyn. 2007;3:66-80. doi: 10.1159/000107604. Genome Dyn. 2007. PMID: 18753785 Review.
The RAGNYA fold: a novel fold with multiple topological variants found in functionally diverse nucleic acid, nucleotide and peptide-binding proteins.
Balaji S, Aravind L. Balaji S, et al. Nucleic Acids Res. 2007;35(17):5658-71. doi: 10.1093/nar/gkm558. Epub 2007 Aug 21. Nucleic Acids Res. 2007. PMID: 17715145 Free PMC article.
Interplay between network structures, regulatory modes and sensing mechanisms of transcription factors in the transcriptional regulatory network of E. coli.
Balaji S, Babu MM, Aravind L. Balaji S, et al. J Mol Biol. 2007 Sep 28;372(4):1108-1122. doi: 10.1016/j.jmb.2007.06.084. Epub 2007 Jul 3. J Mol Biol. 2007. PMID: 17706247 Free PMC article.
Adhesion molecules and other secreted host-interaction determinants in Apicomplexa: insights from comparative genomics.
Anantharaman V, Iyer LM, Balaji S, Aravind L. Anantharaman V, et al. Among authors: balaji s. Int Rev Cytol. 2007;262:1-74. doi: 10.1016/S0074-7696(07)62001-4. Int Rev Cytol. 2007. PMID: 17631186 Review.
The two faces of short-range evolutionary dynamics of regulatory modes in bacterial transcriptional regulatory networks.
Balaji S, Aravind L. Balaji S, et al. Bioessays. 2007 Jul;29(7):625-9. doi: 10.1002/bies.20600. Bioessays. 2007. PMID: 17563073 Review.
The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons.
Babu MM, Iyer LM, Balaji S, Aravind L. Babu MM, et al. Among authors: balaji s. Nucleic Acids Res. 2006;34(22):6505-20. doi: 10.1093/nar/gkl888. Epub 2006 Nov 27. Nucleic Acids Res. 2006. PMID: 17130173 Free PMC article.
Estimating the prevalence and regulatory potential of the telomere looping effect in yeast transcription regulation.
Babu MM, Balaji S, Iyer LM, Aravind L. Babu MM, et al. Among authors: balaji s. Cell Cycle. 2006 Oct;5(20):2354-63. doi: 10.4161/cc.5.20.3386. Epub 2006 Oct 16. Cell Cycle. 2006. PMID: 17102608
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