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Submission of microarray data to public repositories.
Ball CA, Brazma A, Causton H, Chervitz S, Edgar R, Hingamp P, Matese JC, Parkinson H, Quackenbush J, Ringwald M, Sansone SA, Sherlock G, Spellman P, Stoeckert C, Tateno Y, Taylor R, White J, Winegarden N. Ball CA, et al. PLoS Biol. 2004 Sep;2(9):E317. doi: 10.1371/journal.pbio.0020317. Epub 2004 Aug 31. PLoS Biol. 2004. PMID: 15340489 Free PMC article.
The Stanford Microarray Database: a user's guide.
Gollub J, Ball CA, Sherlock G. Gollub J, et al. Among authors: ball ca. Methods Mol Biol. 2006;338:191-208. doi: 10.1385/1-59745-097-9:191. Methods Mol Biol. 2006. PMID: 16888360
MGED standards: work in progress.
Ball CA, Brazma A. Ball CA, et al. OMICS. 2006 Summer;10(2):138-44. doi: 10.1089/omi.2006.10.138. OMICS. 2006. PMID: 16901218 Review.
Design and implementation of microarray gene expression markup language (MAGE-ML).
Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr, Brazma A. Spellman PT, et al. Genome Biol. 2002 Aug 23;3(9):RESEARCH0046. doi: 10.1186/gb-2002-3-9-research0046. Epub 2002 Aug 23. Genome Biol. 2002. PMID: 12225585 Free PMC article.
Standards for microarray data: an open letter.
Ball C, Brazma A, Causton H, Chervitz S, Edgar R, Hingamp P, Matese JC, Parkinson H, Quackenbush J, Ringwald M, Sansone SA, Sherlock G, Spellman P, Stoeckert C, Tateno Y, Taylor R, White J, Winegarden N; MGED Society. Ball C, et al. Environ Health Perspect. 2004 Aug;112(12):A666-7. doi: 10.1289/ehp.112-1277123. Environ Health Perspect. 2004. PMID: 15345376 Free PMC article. No abstract available.
The Stanford Microarray Database: data access and quality assessment tools.
Gollub J, Ball CA, Binkley G, Demeter J, Finkelstein DB, Hebert JM, Hernandez-Boussard T, Jin H, Kaloper M, Matese JC, Schroeder M, Brown PO, Botstein D, Sherlock G. Gollub J, et al. Among authors: ball ca. Nucleic Acids Res. 2003 Jan 1;31(1):94-6. doi: 10.1093/nar/gkg078. Nucleic Acids Res. 2003. PMID: 12519956 Free PMC article.
Funding high-throughput data sharing.
Ball CA, Sherlock G, Brazma A. Ball CA, et al. Nat Biotechnol. 2004 Sep;22(9):1179-83. doi: 10.1038/nbt0904-1179. Nat Biotechnol. 2004. PMID: 15340487 No abstract available.
79 results