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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2013 1
2016 2
2017 1
2018 2
2019 5
2020 1
2021 5
2022 2
2023 8
2024 4
2025 7
2026 4

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40 results

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Page 1
Unraveling the functional dark matter through global metagenomics.
Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E; Novel Metagenome Protein Families Consortium; Iliopoulos I, Konstantinidis K, Tiedje JM, Pett-Ridge J, Baker D, Visel A, Ouzounis CA, Ovchinnikov S, Buluç A, Kyrpides NC. Pavlopoulos GA, et al. Among authors: baltoumas fa. Nature. 2023 Oct;622(7983):594-602. doi: 10.1038/s41586-023-06583-7. Epub 2023 Oct 11. Nature. 2023. PMID: 37821698 Free PMC article.
MPRAbase a Massively Parallel Reporter Assay database.
Zhao J, Baltoumas FA, Konnaris MA, Mouratidis I, Liu Z, Sims J, Agarwal V, Pavlopoulos GA, Georgakopoulos-Soares I, Ahituv N. Zhao J, et al. Among authors: baltoumas fa. Genome Res. 2025 Apr 22:gr.280387.124. doi: 10.1101/gr.280387.124. Online ahead of print. Genome Res. 2025. PMID: 40262894 Free article.
Quadrupia provides a comprehensive catalog of G-quadruplexes across genomes from the tree of life.
Chantzi N, Nayak A, Baltoumas FA, Aplakidou E, Liew SW, Galuh JE, Patsakis M, Montgomery A, Moeckel C, Mouratidis I, Sazed SA, Guiblet W, Karmiris-Obratański P, Wang G, Zaravinos A, Vasquez KM, Kwok CK, Pavlopoulos GA, Georgakopoulos-Soares I. Chantzi N, et al. Among authors: baltoumas fa. Genome Res. 2025 Nov 3;35(11):2578-2600. doi: 10.1101/gr.279790.124. Genome Res. 2025. PMID: 40858360 Free PMC article.
Visualizing metagenomic and metatranscriptomic data: A comprehensive review.
Aplakidou E, Vergoulidis N, Chasapi M, Venetsianou NK, Kokoli M, Panagiotopoulou E, Iliopoulos I, Karatzas E, Pafilis E, Georgakopoulos-Soares I, Kyrpides NC, Pavlopoulos GA, Baltoumas FA. Aplakidou E, et al. Among authors: baltoumas fa. Comput Struct Biotechnol J. 2024 May 3;23:2011-2033. doi: 10.1016/j.csbj.2024.04.060. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 38765606 Free PMC article. Review.
Arena3Dweb: interactive 3D visualization of multilayered networks.
Karatzas E, Baltoumas FA, Panayiotou NA, Schneider R, Pavlopoulos GA. Karatzas E, et al. Among authors: baltoumas fa. Nucleic Acids Res. 2021 Jul 2;49(W1):W36-W45. doi: 10.1093/nar/gkab278. Nucleic Acids Res. 2021. PMID: 33885790 Free PMC article.
Identification of the shortest species-specific oligonucleotide sequences.
Mouratidis I, Konnaris MA, Chantzi N, Chan CSY, Patsakis M, Provatas K, Montgomery A, Baltoumas FA, Sha CM, Mareboina M, Pavlopoulos GA, Chartoumpekis DV, Georgakopoulos-Soares I. Mouratidis I, et al. Among authors: baltoumas fa. Genome Res. 2025 Feb 14;35(2):279-295. doi: 10.1101/gr.280070.124. Genome Res. 2025. PMID: 39746719 Free PMC article.
40 results