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113 results
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BRANCH: boosting RNA-Seq assemblies with partial or related genomic sequences.
Bao E, Jiang T, Girke T. Bao E, et al. Bioinformatics. 2013 May 15;29(10):1250-9. doi: 10.1093/bioinformatics/btt127. Epub 2013 Mar 14. Bioinformatics. 2013. PMID: 23493323
ReMILO: reference assisted misassembly detection algorithm using short and long reads.
Bao E, Song C, Lan L. Bao E, et al. Bioinformatics. 2018 Jan 1;34(1):24-32. doi: 10.1093/bioinformatics/btx524. Bioinformatics. 2018. PMID: 28961789
HALC: High throughput algorithm for long read error correction.
Bao E, Lan L. Bao E, et al. BMC Bioinformatics. 2017 Apr 5;18(1):204. doi: 10.1186/s12859-017-1610-3. BMC Bioinformatics. 2017. PMID: 28381259 Free PMC article.
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references.
Bao E, Jiang T, Girke T. Bao E, et al. Bioinformatics. 2014 Jun 15;30(12):i319-i328. doi: 10.1093/bioinformatics/btu291. Bioinformatics. 2014. PMID: 24932000 Free PMC article.
SEED: efficient clustering of next-generation sequences.
Bao E, Jiang T, Kaloshian I, Girke T. Bao E, et al. Bioinformatics. 2011 Sep 15;27(18):2502-9. doi: 10.1093/bioinformatics/btr447. Epub 2011 Aug 2. Bioinformatics. 2011. PMID: 21810899 Free PMC article.
In planta expression or delivery of potato aphid Macrosiphum euphorbiae effectors Me10 and Me23 enhances aphid fecundity.
Atamian HS, Chaudhary R, Cin VD, Bao E, Girke T, Kaloshian I. Atamian HS, et al. Among authors: bao e. Mol Plant Microbe Interact. 2013 Jan;26(1):67-74. doi: 10.1094/MPMI-06-12-0144-FI. Mol Plant Microbe Interact. 2013. PMID: 23194342
Sequence analysis of the potato aphid Macrosiphum euphorbiae transcriptome identified two new viruses.
Teixeira MA, Sela N, Atamian HS, Bao E, Chaudhary R, MacWilliams J, He J, Mantelin S, Girke T, Kaloshian I. Teixeira MA, et al. Among authors: bao e. PLoS One. 2018 Mar 29;13(3):e0193239. doi: 10.1371/journal.pone.0193239. eCollection 2018. PLoS One. 2018. PMID: 29596449 Free PMC article.
FLAS: fast and high-throughput algorithm for PacBio long-read self-correction.
Bao E, Xie F, Song C, Song D. Bao E, et al. Bioinformatics. 2019 Oct 15;35(20):3953-3960. doi: 10.1093/bioinformatics/btz206. Bioinformatics. 2019. PMID: 30895306
Transcriptomic investigation reveals toxic damage due to tilmicosin and potential resistance against tilmicosin in primary chicken myocardial cells.
Zhang X, Zhu J, Yang B, Chen B, Wu J, Sha J, Bao E. Zhang X, et al. Among authors: bao e. Poult Sci. 2020 Dec;99(12):6355-6370. doi: 10.1016/j.psj.2020.08.080. Epub 2020 Sep 16. Poult Sci. 2020. PMID: 33248551 Free PMC article.
Pseudorabies virus glycoprotein gE suppresses interferon-β production via CREB-binding protein degradation.
Lu M, Qiu S, Zhang L, Sun Y, Bao E, Lv Y. Lu M, et al. Among authors: bao e. Virus Res. 2021 Jan 2;291:198220. doi: 10.1016/j.virusres.2020.198220. Epub 2020 Nov 2. Virus Res. 2021. PMID: 33152381
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