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104 results
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Deleterious mutation prediction in the secondary structure of RNAs.
Barash D. Barash D. Nucleic Acids Res. 2003 Nov 15;31(22):6578-84. doi: 10.1093/nar/gkg872. Nucleic Acids Res. 2003. PMID: 14602917 Free PMC article.
RNAmute: RNA secondary structure mutation analysis tool.
Churkin A, Barash D. Churkin A, et al. BMC Bioinformatics. 2006 Apr 25;7:221. doi: 10.1186/1471-2105-7-221. BMC Bioinformatics. 2006. PMID: 16638137 Free PMC article.
Shape similarity measures for the design of small RNA switches.
Avihoo A, Barash D. Avihoo A, et al. J Biomol Struct Dyn. 2006 Aug;24(1):17-24. doi: 10.1080/07391102.2006.10507094. J Biomol Struct Dyn. 2006. PMID: 16780371
Tracing ancient mRNA hairpins.
Gabdank I, Barash D, Trifonov EN. Gabdank I, et al. J Biomol Struct Dyn. 2006 Oct;24(2):163-9. doi: 10.1080/07391102.2006.10507109. J Biomol Struct Dyn. 2006. PMID: 16928139
In silico design of small RNA switches.
Avihoo A, Gabdank I, Shapira M, Barash D. Avihoo A, et al. IEEE Trans Nanobioscience. 2007 Mar;6(1):4-11. doi: 10.1109/tnb.2007.891894. IEEE Trans Nanobioscience. 2007. PMID: 17393844
A structure-based flexible search method for motifs in RNA.
Veksler-Lublinsky I, Ziv-Ukelson M, Barash D, Kedem K. Veksler-Lublinsky I, et al. J Comput Biol. 2007 Sep;14(7):908-26. doi: 10.1089/cmb.2007.0061. J Comput Biol. 2007. PMID: 17803370
Finding a common motif of RNA sequences using genetic programming: the GeRNAMo system.
Michal S, Ivry T, Cohen O, Sipper M, Barash D. Michal S, et al. IEEE/ACM Trans Comput Biol Bioinform. 2007 Oct-Dec;4(4):596-610. doi: 10.1109/tcbb.2007.1045. IEEE/ACM Trans Comput Biol Bioinform. 2007. PMID: 17975271
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