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130 results
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Comparative analysis indicates regulatory neofunctionalization of yeast duplicates.
Tirosh I, Barkai N. Tirosh I, et al. Among authors: barkai n. Genome Biol. 2007;8(4):R50. doi: 10.1186/gb-2007-8-4-r50. Genome Biol. 2007. PMID: 17411427 Free PMC article.
Revealing modular organization in the yeast transcriptional network.
Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N. Ihmels J, et al. Among authors: barkai n. Nat Genet. 2002 Aug;31(4):370-7. doi: 10.1038/ng941. Epub 2002 Jul 22. Nat Genet. 2002. PMID: 12134151
Iterative signature algorithm for the analysis of large-scale gene expression data.
Bergmann S, Ihmels J, Barkai N. Bergmann S, et al. Among authors: barkai n. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Mar;67(3 Pt 1):031902. doi: 10.1103/PhysRevE.67.031902. Epub 2003 Mar 11. Phys Rev E Stat Nonlin Soft Matter Phys. 2003. PMID: 12689096
Self-enhanced ligand degradation underlies robustness of morphogen gradients.
Eldar A, Rosin D, Shilo BZ, Barkai N. Eldar A, et al. Among authors: barkai n. Dev Cell. 2003 Oct;5(4):635-46. doi: 10.1016/s1534-5807(03)00292-2. Dev Cell. 2003. PMID: 14536064
Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae.
Ihmels J, Levy R, Barkai N. Ihmels J, et al. Among authors: barkai n. Nat Biotechnol. 2004 Jan;22(1):86-92. doi: 10.1038/nbt918. Epub 2003 Nov 30. Nat Biotechnol. 2004. PMID: 14647306
Similarities and differences in genome-wide expression data of six organisms.
Bergmann S, Ihmels J, Barkai N. Bergmann S, et al. Among authors: barkai n. PLoS Biol. 2004 Jan;2(1):E9. doi: 10.1371/journal.pbio.0020009. Epub 2003 Dec 15. PLoS Biol. 2004. PMID: 14737187 Free PMC article.
Defining transcription modules using large-scale gene expression data.
Ihmels J, Bergmann S, Barkai N. Ihmels J, et al. Among authors: barkai n. Bioinformatics. 2004 Sep 1;20(13):1993-2003. doi: 10.1093/bioinformatics/bth166. Epub 2004 Mar 25. Bioinformatics. 2004. PMID: 15044247
Interpreting clone-mediated perturbations of morphogen profiles.
Eldar A, Barkai N. Eldar A, et al. Among authors: barkai n. Dev Biol. 2005 Feb 1;278(1):203-7. doi: 10.1016/j.ydbio.2004.11.002. Dev Biol. 2005. PMID: 15649472 Review.
Computational verification of protein-protein interactions by orthologous co-expression.
Tirosh I, Barkai N. Tirosh I, et al. Among authors: barkai n. BMC Bioinformatics. 2005 Mar 2;6:40. doi: 10.1186/1471-2105-6-40. BMC Bioinformatics. 2005. PMID: 15740634 Free PMC article.
Evaluating putative mechanisms of the mitotic spindle checkpoint.
Doncic A, Ben-Jacob E, Barkai N. Doncic A, et al. Among authors: barkai n. Proc Natl Acad Sci U S A. 2005 May 3;102(18):6332-7. doi: 10.1073/pnas.0409142102. Epub 2005 Apr 25. Proc Natl Acad Sci U S A. 2005. PMID: 15851663 Free PMC article.
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