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52 results
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Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data.
Barozzi I, Termanini A, Minucci S, Natoli G. Barozzi I, et al. Biol Direct. 2011 Oct 6;6:51. doi: 10.1186/1745-6150-6-51. Biol Direct. 2011. PMID: 21978789 Free PMC article.
The genomic landscapes of inflammation.
Natoli G, Ghisletti S, Barozzi I. Natoli G, et al. Among authors: barozzi i. Genes Dev. 2011 Jan 15;25(2):101-6. doi: 10.1101/gad.2018811. Genes Dev. 2011. PMID: 21245163 Free PMC article. Review.
Non-coding transcription at cis-regulatory elements: computational and experimental approaches.
Simonatto M, Barozzi I, Natoli G. Simonatto M, et al. Among authors: barozzi i. Methods. 2013 Sep 1;63(1):66-75. doi: 10.1016/j.ymeth.2013.03.021. Epub 2013 Mar 29. Methods. 2013. PMID: 23542771
Targeting the scaffolding role of LSD1 (KDM1A) poises acute myeloid leukemia cells for retinoic acid-induced differentiation.
Ravasio R, Ceccacci E, Nicosia L, Hosseini A, Rossi PL, Barozzi I, Fornasari L, Zuffo RD, Valente S, Fioravanti R, Mercurio C, Varasi M, Mattevi A, Mai A, Pavesi G, Bonaldi T, Minucci S. Ravasio R, et al. Among authors: barozzi i. Sci Adv. 2020 Apr 8;6(15):eaax2746. doi: 10.1126/sciadv.aax2746. eCollection 2020 Apr. Sci Adv. 2020. PMID: 32284990 Free PMC article.
A large fraction of extragenic RNA pol II transcription sites overlap enhancers.
De Santa F, Barozzi I, Mietton F, Ghisletti S, Polletti S, Tusi BK, Muller H, Ragoussis J, Wei CL, Natoli G. De Santa F, et al. Among authors: barozzi i. PLoS Biol. 2010 May 11;8(5):e1000384. doi: 10.1371/journal.pbio.1000384. PLoS Biol. 2010. PMID: 20485488 Free PMC article.
Genome-wide mapping of Myc binding and gene regulation in serum-stimulated fibroblasts.
Perna D, Fagà G, Verrecchia A, Gorski MM, Barozzi I, Narang V, Khng J, Lim KC, Sung WK, Sanges R, Stupka E, Oskarsson T, Trumpp A, Wei CL, Müller H, Amati B. Perna D, et al. Among authors: barozzi i. Oncogene. 2012 Mar 29;31(13):1695-709. doi: 10.1038/onc.2011.359. Epub 2011 Aug 22. Oncogene. 2012. PMID: 21860422 Free PMC article.
Identification and characterization of enhancers controlling the inflammatory gene expression program in macrophages.
Ghisletti S, Barozzi I, Mietton F, Polletti S, De Santa F, Venturini E, Gregory L, Lonie L, Chew A, Wei CL, Ragoussis J, Natoli G. Ghisletti S, et al. Among authors: barozzi i. Immunity. 2010 Mar 26;32(3):317-28. doi: 10.1016/j.immuni.2010.02.008. Epub 2010 Mar 4. Immunity. 2010. PMID: 20206554
Yin Yang 1 extends the Myc-related transcription factors network in embryonic stem cells.
Vella P, Barozzi I, Cuomo A, Bonaldi T, Pasini D. Vella P, et al. Among authors: barozzi i. Nucleic Acids Res. 2012 Apr;40(8):3403-18. doi: 10.1093/nar/gkr1290. Epub 2011 Dec 30. Nucleic Acids Res. 2012. PMID: 22210892 Free PMC article.
Requirement for the histone deacetylase Hdac3 for the inflammatory gene expression program in macrophages.
Chen X, Barozzi I, Termanini A, Prosperini E, Recchiuti A, Dalli J, Mietton F, Matteoli G, Hiebert S, Natoli G. Chen X, et al. Among authors: barozzi i. Proc Natl Acad Sci U S A. 2012 Oct 16;109(42):E2865-74. doi: 10.1073/pnas.1121131109. Epub 2012 Jul 16. Proc Natl Acad Sci U S A. 2012. PMID: 22802645 Free PMC article.
Polycomb-dependent H3K27me1 and H3K27me2 regulate active transcription and enhancer fidelity.
Ferrari KJ, Scelfo A, Jammula S, Cuomo A, Barozzi I, Stützer A, Fischle W, Bonaldi T, Pasini D. Ferrari KJ, et al. Among authors: barozzi i. Mol Cell. 2014 Jan 9;53(1):49-62. doi: 10.1016/j.molcel.2013.10.030. Epub 2013 Nov 27. Mol Cell. 2014. PMID: 24289921
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