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Matrix and Steiner-triple-system smart pooling assays for high-performance transcription regulatory network mapping.
Vermeirssen V, Deplancke B, Barrasa MI, Reece-Hoyes JS, Arda HE, Grove CA, Martinez NJ, Sequerra R, Doucette-Stamm L, Brent MR, Walhout AJ. Vermeirssen V, et al. Among authors: Barrasa MI. Nat Methods. 2007 Aug;4(8):659-64. doi: 10.1038/nmeth1063. Epub 2007 Jun 24. Nat Methods. 2007. PMID: 17589517
Chromosome-biased binding and gene regulation by the Caenorhabditis elegans DRM complex.
Tabuchi TM, Deplancke B, Osato N, Zhu LJ, Barrasa MI, Harrison MM, Horvitz HR, Walhout AJ, Hagstrom KA. Tabuchi TM, et al. Among authors: Barrasa MI. PLoS Genet. 2011 May;7(5):e1002074. doi: 10.1371/journal.pgen.1002074. Epub 2011 May 12. PLoS Genet. 2011. PMID: 21589891 Free PMC article.
Deletion of the de novo DNA methyltransferase Dnmt3a promotes lung tumor progression.
Gao Q, Steine EJ, Barrasa MI, Hockemeyer D, Pawlak M, Fu D, Reddy S, Bell GW, Jaenisch R. Gao Q, et al. Among authors: Barrasa MI. Proc Natl Acad Sci U S A. 2011 Nov 1;108(44):18061-6. doi: 10.1073/pnas.1114946108. Epub 2011 Oct 19. Proc Natl Acad Sci U S A. 2011. PMID: 22011581 Free PMC article.
Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development.
Dawlaty MM, Breiling A, Le T, Raddatz G, Barrasa MI, Cheng AW, Gao Q, Powell BE, Li Z, Xu M, Faull KF, Lyko F, Jaenisch R. Dawlaty MM, et al. Among authors: Barrasa MI. Dev Cell. 2013 Feb 11;24(3):310-23. doi: 10.1016/j.devcel.2012.12.015. Epub 2013 Jan 24. Dev Cell. 2013. PMID: 23352810 Free PMC article.
Loss of Tet enzymes compromises proper differentiation of embryonic stem cells.
Dawlaty MM, Breiling A, Le T, Barrasa MI, Raddatz G, Gao Q, Powell BE, Cheng AW, Faull KF, Lyko F, Jaenisch R. Dawlaty MM, et al. Among authors: Barrasa MI. Dev Cell. 2014 Apr 14;29(1):102-11. doi: 10.1016/j.devcel.2014.03.003. Dev Cell. 2014. PMID: 24735881 Free PMC article.
Genome-Scale Networks Link Neurodegenerative Disease Genes to α-Synuclein through Specific Molecular Pathways.
Khurana V, Peng J, Chung CY, Auluck PK, Fanning S, Tardiff DF, Bartels T, Koeva M, Eichhorn SW, Benyamini H, Lou Y, Nutter-Upham A, Baru V, Freyzon Y, Tuncbag N, Costanzo M, San Luis BJ, Schöndorf DC, Barrasa MI, Ehsani S, Sanjana N, Zhong Q, Gasser T, Bartel DP, Vidal M, Deleidi M, Boone C, Fraenkel E, Berger B, Lindquist S. Khurana V, et al. Among authors: Barrasa MI. Cell Syst. 2017 Feb 22;4(2):157-170.e14. doi: 10.1016/j.cels.2016.12.011. Epub 2017 Jan 25. Cell Syst. 2017. PMID: 28131822 Free PMC article.
Dihydropyrimidine-Thiones and Clioquinol Synergize To Target β-Amyloid Cellular Pathologies through a Metal-Dependent Mechanism.
Tardiff DF, Brown LE, Yan X, Trilles R, Jui NT, Barrasa MI, Caldwell KA, Caldwell GA, Schaus SE, Lindquist S. Tardiff DF, et al. Among authors: Barrasa MI. ACS Chem Neurosci. 2017 Sep 20;8(9):2039-2055. doi: 10.1021/acschemneuro.7b00187. Epub 2017 Jul 12. ACS Chem Neurosci. 2017. PMID: 28628299 Free PMC article.
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