Barrick JE - Search Results

1

Coenzyme B12 riboswitches are widespread genetic control elements in prokaryotes.

Nahvi A, Barrick JE, Breaker RR. Nahvi A, et al. Among authors: barrick je. Nucleic Acids Res. 2004 Jan 2;32(1):143-50. doi: 10.1093/nar/gkh167. Print 2004. Nucleic Acids Res. 2004. PMID: 14704351 Free PMC article.

2

A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism.

Regulski EE, Moy RH, Weinberg Z, Barrick JE, Yao Z, Ruzzo WL, Breaker RR. Regulski EE, et al. Among authors: barrick je. Mol Microbiol. 2008 May;68(4):918-32. doi: 10.1111/j.1365-2958.2008.06208.x. Epub 2008 Mar 19. Mol Microbiol. 2008. PMID: 18363797 Free PMC article.

3

A glycine-dependent riboswitch that uses cooperative binding to control gene expression.

Mandal M, Lee M, Barrick JE, Weinberg Z, Emilsson GM, Ruzzo WL, Breaker RR. Mandal M, et al. Among authors: barrick je. Science. 2004 Oct 8;306(5694):275-9. doi: 10.1126/science.1100829. Science. 2004. PMID: 15472076

4

Identification of a large noncoding RNA in extremophilic eubacteria.

Puerta-Fernandez E, Barrick JE, Roth A, Breaker RR. Puerta-Fernandez E, et al. Among authors: barrick je. Proc Natl Acad Sci U S A. 2006 Dec 19;103(51):19490-5. doi: 10.1073/pnas.0607493103. Epub 2006 Dec 12. Proc Natl Acad Sci U S A. 2006. PMID: 17164334 Free PMC article.

5

Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline.

Weinberg Z, Barrick JE, Yao Z, Roth A, Kim JN, Gore J, Wang JX, Lee ER, Block KF, Sudarsan N, Neph S, Tompa M, Ruzzo WL, Breaker RR. Weinberg Z, et al. Among authors: barrick je. Nucleic Acids Res. 2007;35(14):4809-19. doi: 10.1093/nar/gkm487. Epub 2007 Jul 9. Nucleic Acids Res. 2007. PMID: 17621584 Free PMC article.

6

The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches.

Weinberg Z, Regulski EE, Hammond MC, Barrick JE, Yao Z, Ruzzo WL, Breaker RR. Weinberg Z, et al. Among authors: barrick je. RNA. 2008 May;14(5):822-8. doi: 10.1261/rna.988608. Epub 2008 Mar 27. RNA. 2008. PMID: 18369181 Free PMC article.

7

Tandem riboswitch architectures exhibit complex gene control functions.

Sudarsan N, Hammond MC, Block KF, Welz R, Barrick JE, Roth A, Breaker RR. Sudarsan N, et al. Among authors: barrick je. Science. 2006 Oct 13;314(5797):300-4. doi: 10.1126/science.1130716. Science. 2006. PMID: 17038623

8

Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria.

Corbino KA, Barrick JE, Lim J, Welz R, Tucker BJ, Puskarz I, Mandal M, Rudnick ND, Breaker RR. Corbino KA, et al. Among authors: barrick je. Genome Biol. 2005;6(8):R70. doi: 10.1186/gb-2005-6-8-r70. Epub 2005 Aug 1. Genome Biol. 2005. PMID: 16086852 Free PMC article.

9

6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter.

Barrick JE, Sudarsan N, Weinberg Z, Ruzzo WL, Breaker RR. Barrick JE, et al. RNA. 2005 May;11(5):774-84. doi: 10.1261/rna.7286705. Epub 2005 Apr 5. RNA. 2005. PMID: 15811922 Free PMC article.

10

New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control.

Barrick JE, Corbino KA, Winkler WC, Nahvi A, Mandal M, Collins J, Lee M, Roth A, Sudarsan N, Jona I, Wickiser JK, Breaker RR. Barrick JE, et al. Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6421-6. doi: 10.1073/pnas.0308014101. Epub 2004 Apr 19. Proc Natl Acad Sci U S A. 2004. PMID: 15096624 Free PMC article.

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