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RSVSim: an R/Bioconductor package for the simulation of structural variations.
Bartenhagen C, Dugas M. Bartenhagen C, et al. Bioinformatics. 2013 Jul 1;29(13):1679-81. doi: 10.1093/bioinformatics/btt198. Epub 2013 Apr 25. Bioinformatics. 2013. PMID: 23620362
Comparative study of unsupervised dimension reduction techniques for the visualization of microarray gene expression data.
Bartenhagen C, Klein HU, Ruckert C, Jiang X, Dugas M. Bartenhagen C, et al. BMC Bioinformatics. 2010 Nov 18;11:567. doi: 10.1186/1471-2105-11-567. BMC Bioinformatics. 2010. PMID: 21087509 Free PMC article.
R453Plus1Toolbox: an R/Bioconductor package for analyzing Roche 454 Sequencing data.
Klein HU, Bartenhagen C, Kohlmann A, Grossmann V, Ruckert C, Haferlach T, Dugas M. Klein HU, et al. Bioinformatics. 2011 Apr 15;27(8):1162-3. doi: 10.1093/bioinformatics/btr102. Epub 2011 Feb 23. Bioinformatics. 2011. PMID: 21349869
A new workflow for whole-genome sequencing of single human cells.
Binder V, Bartenhagen C, Okpanyi V, Gombert M, Moehlendick B, Behrens B, Klein HU, Rieder H, Ida Krell PF, Dugas M, Stoecklein NH, Borkhardt A. Binder V, et al. Hum Mutat. 2014 Oct;35(10):1260-70. doi: 10.1002/humu.22625. Epub 2014 Aug 18. Hum Mutat. 2014. PMID: 25066732
Genomic landscape of liposarcoma.
Kanojia D, Nagata Y, Garg M, Lee DH, Sato A, Yoshida K, Sato Y, Sanada M, Mayakonda A, Bartenhagen C, Klein HU, Doan NB, Said JW, Mohith S, Gunasekar S, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Myklebost O, Yang H, Dugas M, Meza-Zepeda LA, Silberman AW, Forscher C, Tyner JW, Ogawa S, Koeffler HP. Kanojia D, et al. Oncotarget. 2015 Dec 15;6(40):42429-44. doi: 10.18632/oncotarget.6464. Oncotarget. 2015. PMID: 26643872 Free PMC article.
A robust method to analyze copy number alterations of less than 100 kb in single cells using oligonucleotide array CGH.
Möhlendick B, Bartenhagen C, Behrens B, Honisch E, Raba K, Knoefel WT, Stoecklein NH. Möhlendick B, et al. PLoS One. 2013 Jun 25;8(6):e67031. doi: 10.1371/journal.pone.0067031. Print 2013. PLoS One. 2013. PMID: 23825608 Free PMC article.
Next-generation-sequencing of recurrent childhood high hyperdiploid acute lymphoblastic leukemia reveals mutations typically associated with high risk patients.
Chen C, Bartenhagen C, Gombert M, Okpanyi V, Binder V, Röttgers S, Bradtke J, Teigler-Schlegel A, Harbott J, Ginzel S, Thiele R, Husemann P, Krell PF, Borkhardt A, Dugas M, Hu J, Fischer U. Chen C, et al. Leuk Res. 2015 Sep;39(9):990-1001. doi: 10.1016/j.leukres.2015.06.005. Epub 2015 Jun 14. Leuk Res. 2015. PMID: 26189108
Next-generation-sequencing-based risk stratification and identification of new genes involved in structural and sequence variations in near haploid lymphoblastic leukemia.
Chen C, Bartenhagen C, Gombert M, Okpanyi V, Binder V, Röttgers S, Bradtke J, Teigler-Schlegel A, Harbott J, Ginzel S, Thiele R, Fischer U, Dugas M, Hu J, Borkhardt A. Chen C, et al. Genes Chromosomes Cancer. 2013 Jun;52(6):564-79. doi: 10.1002/gcc.22054. Epub 2013 Mar 18. Genes Chromosomes Cancer. 2013. PMID: 23508829
ACGH detects distinct genomic alterations of primary intrahepatic cholangiocarcinomas and matched lymph node metastases and identifies a poor prognosis subclass.
Jansen R, Moehlendick B, Bartenhagen C, Tóth C, Lehwald N, Stoecklein NH, Knoefel WT, Lachenmayer A. Jansen R, et al. Among authors: bartenhagen c. Sci Rep. 2018 Jul 13;8(1):10637. doi: 10.1038/s41598-018-28941-6. Sci Rep. 2018. PMID: 30006612 Free PMC article.
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