Bastolla U - Search Results

1

Reconstruction of protein structures from a vectorial representation.

Porto M, Bastolla U, Roman HE, Vendruscolo M. Porto M, et al. Among authors: bastolla u. Phys Rev Lett. 2004 May 28;92(21):218101. doi: 10.1103/PhysRevLett.92.218101. Epub 2004 May 28. Phys Rev Lett. 2004. PMID: 15245321

2

High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH.

Teichert F, Minning J, Bastolla U, Porto M. Teichert F, et al. Among authors: bastolla u. BMC Bioinformatics. 2010 May 14;11:251. doi: 10.1186/1471-2105-11-251. BMC Bioinformatics. 2010. PMID: 20470364 Free PMC article.

3

SABERTOOTH: protein structural alignment based on a vectorial structure representation.

Teichert F, Bastolla U, Porto M. Teichert F, et al. Among authors: bastolla u. BMC Bioinformatics. 2007 Oct 31;8:425. doi: 10.1186/1471-2105-8-425. BMC Bioinformatics. 2007. PMID: 17974011 Free PMC article.

4

Prediction of site-specific amino acid distributions and limits of divergent evolutionary changes in protein sequences.

Porto M, Roman HE, Vendruscolo M, Bastolla U. Porto M, et al. Among authors: bastolla u. Mol Biol Evol. 2005 Mar;22(3):630-8. doi: 10.1093/molbev/msi048. Epub 2004 Nov 10. Mol Biol Evol. 2005. PMID: 15537801

5

Lack of self-averaging in neutral evolution of proteins.

Bastolla U, Porto M, Roman HE, Vendruscolo M. Bastolla U, et al. Phys Rev Lett. 2002 Nov 11;89(20):208101. doi: 10.1103/PhysRevLett.89.208101. Epub 2002 Oct 24. Phys Rev Lett. 2002. PMID: 12443510

6

Torsional network model: normal modes in torsion angle space better correlate with conformation changes in proteins.

Mendez R, Bastolla U. Mendez R, et al. Among authors: bastolla u. Phys Rev Lett. 2010 Jun 4;104(22):228103. doi: 10.1103/PhysRevLett.104.228103. Epub 2010 Jun 3. Phys Rev Lett. 2010. PMID: 20867208

7

How to guarantee optimal stability for most representative structures in the Protein Data Bank.

Bastolla U, Farwer J, Knapp EW, Vendruscolo M. Bastolla U, et al. Proteins. 2001 Aug 1;44(2):79-96. doi: 10.1002/prot.1075. Proteins. 2001. PMID: 11391771

8

Exactness of the annealed and the replica symmetric approximations for random heteropolymers.

Bastolla U, Grassberger P. Bastolla U, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Mar;63(3 Pt 1):031901. doi: 10.1103/PhysRevE.63.031901. Epub 2001 Feb 14. Phys Rev E Stat Nonlin Soft Matter Phys. 2001. PMID: 11308672

9

Shape of ecological networks.

Lässig M, Bastolla U, Manrubia SC, Valleriani A. Lässig M, et al. Among authors: bastolla u. Phys Rev Lett. 2001 May 7;86(19):4418-21. doi: 10.1103/PhysRevLett.86.4418. Phys Rev Lett. 2001. PMID: 11328189

10

Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.

Pascual-García A, Abia D, Ortiz AR, Bastolla U. Pascual-García A, et al. Among authors: bastolla u. PLoS Comput Biol. 2009 Mar;5(3):e1000331. doi: 10.1371/journal.pcbi.1000331. Epub 2009 Mar 27. PLoS Comput Biol. 2009. PMID: 19325884 Free PMC article.

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