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Pathway databases and tools for their exploitation: benefits, current limitations and challenges.
Bauer-Mehren A, Furlong LI, Sanz F. Bauer-Mehren A, et al. Mol Syst Biol. 2009;5:290. doi: 10.1038/msb.2009.47. Epub 2009 Jul 28. Mol Syst Biol. 2009. PMID: 19638971 Free PMC article.
Integration of genomic information with biological networks using Cytoscape.
Bauer-Mehren A. Bauer-Mehren A. Methods Mol Biol. 2013;1021:37-61. doi: 10.1007/978-1-62703-450-0_3. Methods Mol Biol. 2013. PMID: 23715979
Gathering and exploring scientific knowledge in pharmacovigilance.
Lopes P, Nunes T, Campos D, Furlong LI, Bauer-Mehren A, Sanz F, Carrascosa MC, Mestres J, Kors J, Singh B, van Mulligen E, Van der Lei J, Diallo G, Avillach P, Ahlberg E, Boyer S, Diaz C, Oliveira JL. Lopes P, et al. Among authors: bauer mehren a. PLoS One. 2013 Dec 11;8(12):e83016. doi: 10.1371/journal.pone.0083016. eCollection 2013. PLoS One. 2013. PMID: 24349421 Free PMC article.
DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes.
Piñero J, Queralt-Rosinach N, Bravo À, Deu-Pons J, Bauer-Mehren A, Baron M, Sanz F, Furlong LI. Piñero J, et al. Among authors: bauer mehren a. Database (Oxford). 2015 Apr 15;2015:bav028. doi: 10.1093/database/bav028. Print 2015. Database (Oxford). 2015. PMID: 25877637 Free PMC article.
Automatic filtering and substantiation of drug safety signals.
Bauer-Mehren A, van Mullingen EM, Avillach P, Carrascosa Mdel C, Garcia-Serna R, Piñero J, Singh B, Lopes P, Oliveira JL, Diallo G, Ahlberg Helgee E, Boyer S, Mestres J, Sanz F, Kors JA, Furlong LI. Bauer-Mehren A, et al. PLoS Comput Biol. 2012;8(4):e1002457. doi: 10.1371/journal.pcbi.1002457. Epub 2012 Apr 5. PLoS Comput Biol. 2012. PMID: 22496632 Free PMC article.
Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases.
Bauer-Mehren A, Bundschus M, Rautschka M, Mayer MA, Sanz F, Furlong LI. Bauer-Mehren A, et al. PLoS One. 2011;6(6):e20284. doi: 10.1371/journal.pone.0020284. Epub 2011 Jun 14. PLoS One. 2011. PMID: 21695124 Free PMC article.
DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze gene-disease networks.
Bauer-Mehren A, Rautschka M, Sanz F, Furlong LI. Bauer-Mehren A, et al. Bioinformatics. 2010 Nov 15;26(22):2924-6. doi: 10.1093/bioinformatics/btq538. Epub 2010 Sep 21. Bioinformatics. 2010. PMID: 20861032
A novel multilevel statistical method for the study of the relationships between multireceptorial binding affinity profiles and in vivo endpoints.
Selent J, Bauer-Mehren A, López L, Loza MI, Sanz F, Pastor M. Selent J, et al. Mol Pharmacol. 2010 Feb;77(2):149-58. doi: 10.1124/mol.109.060103. Epub 2009 Nov 10. Mol Pharmacol. 2010. PMID: 19903829
From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways.
Bauer-Mehren A, Furlong LI, Rautschka M, Sanz F. Bauer-Mehren A, et al. BMC Bioinformatics. 2009 Aug 27;10 Suppl 8(Suppl 8):S6. doi: 10.1186/1471-2105-10-S8-S6. BMC Bioinformatics. 2009. PMID: 19758470 Free PMC article.
Functional evaluation of out-of-the-box text-mining tools for data-mining tasks.
Jung K, LePendu P, Iyer S, Bauer-Mehren A, Percha B, Shah NH. Jung K, et al. Among authors: bauer mehren a. J Am Med Inform Assoc. 2015 Jan;22(1):121-31. doi: 10.1136/amiajnl-2014-002902. Epub 2014 Oct 21. J Am Med Inform Assoc. 2015. PMID: 25336595 Free PMC article.
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