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The GPMDB REST interface.
Fenyö D, Beavis RC. Fenyö D, et al. Bioinformatics. 2015 Jun 15;31(12):2056-8. doi: 10.1093/bioinformatics/btv107. Epub 2015 Feb 19. Bioinformatics. 2015. PMID: 25697819
Using annotated peptide mass spectrum libraries for protein identification.
Craig R, Cortens JC, Fenyo D, Beavis RC. Craig R, et al. J Proteome Res. 2006 Aug;5(8):1843-9. doi: 10.1021/pr0602085. J Proteome Res. 2006. PMID: 16889405
Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications.
Omenn GS, Lane L, Lundberg EK, Beavis RC, Overall CM, Deutsch EW. Omenn GS, et al. Among authors: beavis rc. J Proteome Res. 2016 Nov 4;15(11):3951-3960. doi: 10.1021/acs.jproteome.6b00511. Epub 2016 Sep 20. J Proteome Res. 2016. PMID: 27487407 Free PMC article.
g2pDB: A Database Mapping Protein Post-Translational Modifications to Genomic Coordinates.
Keegan S, Cortens JP, Beavis RC, Fenyö D. Keegan S, et al. Among authors: beavis rc. J Proteome Res. 2016 Mar 4;15(3):983-90. doi: 10.1021/acs.jproteome.5b01018. Epub 2016 Feb 18. J Proteome Res. 2016. PMID: 26842767
Toward an Upgraded Honey Bee (Apis mellifera L.) Genome Annotation Using Proteogenomics.
McAfee A, Harpur BA, Michaud S, Beavis RC, Kent CF, Zayed A, Foster LJ. McAfee A, et al. Among authors: beavis rc. J Proteome Res. 2016 Feb 5;15(2):411-21. doi: 10.1021/acs.jproteome.5b00589. Epub 2016 Jan 13. J Proteome Res. 2016. PMID: 26718741
Selenocysteine: Wherefore Art Thou?
Fenyö D, Beavis RC. Fenyö D, et al. Among authors: beavis rc. J Proteome Res. 2016 Feb 5;15(2):677-8. doi: 10.1021/acs.jproteome.5b01028. Epub 2015 Dec 22. J Proteome Res. 2016. PMID: 26680273
In silico protein interaction analysis using the global proteome machine database.
Zhang CC, Rogalski JC, Evans DM, Klockenbusch C, Beavis RC, Kast J. Zhang CC, et al. J Proteome Res. 2011 Feb 4;10(2):656-68. doi: 10.1021/pr1008652. Epub 2010 Dec 2. J Proteome Res. 2011. PMID: 21067242
Proteome-wide prediction of acetylation substrates.
Basu A, Rose KL, Zhang J, Beavis RC, Ueberheide B, Garcia BA, Chait B, Zhao Y, Hunt DF, Segal E, Allis CD, Hake SB. Basu A, et al. Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13785-90. doi: 10.1073/pnas.0906801106. Epub 2009 Aug 3. Proc Natl Acad Sci U S A. 2009. PMID: 19666589 Free PMC article.
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