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48 results
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Predicting gene expression from sequence.
Beer MA, Tavazoie S. Beer MA, et al. Cell. 2004 Apr 16;117(2):185-98. doi: 10.1016/s0092-8674(04)00304-6. Cell. 2004. PMID: 15084257
Whole-genome discovery of transcription factor binding sites by network-level conservation.
Pritsker M, Liu YC, Beer MA, Tavazoie S. Pritsker M, et al. Among authors: beer ma. Genome Res. 2004 Jan;14(1):99-108. doi: 10.1101/gr.1739204. Epub 2003 Dec 12. Genome Res. 2004. PMID: 14672978 Free PMC article.
Functional characterization of a novel Ku70/80 pause site at the H19/Igf2 imprinting control region.
Katz DJ, Beer MA, Levorse JM, Tilghman SM. Katz DJ, et al. Among authors: beer ma. Mol Cell Biol. 2005 May;25(10):3855-63. doi: 10.1128/MCB.25.10.3855-3863.2005. Mol Cell Biol. 2005. PMID: 15870260 Free PMC article.
Nanobody-Based Probes for Subcellular Protein Identification and Visualization.
de Beer MA, Giepmans BNG. de Beer MA, et al. Front Cell Neurosci. 2020 Nov 2;14:573278. doi: 10.3389/fncel.2020.573278. eCollection 2020. Front Cell Neurosci. 2020. PMID: 33240044 Free PMC article. Review.
Host shifting and host sharing in a genus of specialist flies diversifying alongside their sunflower hosts.
Hippee AC, Beer MA, Bagley RK, Condon MA, Kitchen A, Lisowski EA, Norrbom AL, Forbes AA. Hippee AC, et al. Among authors: beer ma. J Evol Biol. 2020 Nov 15. doi: 10.1111/jeb.13740. Online ahead of print. J Evol Biol. 2020. PMID: 33190382
Perspectives on ENCODE.
ENCODE Project Consortium, Snyder MP, Gingeras TR, Moore JE, Weng Z, Gerstein MB, Ren B, Hardison RC, Stamatoyannopoulos JA, Graveley BR, Feingold EA, Pazin MJ, Pagan M, Gilchrist DA, Hitz BC, Cherry JM, Bernstein BE, Mendenhall EM, Zerbino DR, Frankish A, Flicek P, Myers RM. ENCODE Project Consortium, et al. Nature. 2020 Jul;583(7818):693-698. doi: 10.1038/s41586-020-2449-8. Epub 2020 Jul 29. Nature. 2020. PMID: 32728248 Free PMC article.
Enhancer Predictions and Genome-Wide Regulatory Circuits.
Beer MA, Shigaki D, Huangfu D. Beer MA, et al. Annu Rev Genomics Hum Genet. 2020 Aug 31;21:37-54. doi: 10.1146/annurev-genom-121719-010946. Epub 2020 May 22. Annu Rev Genomics Hum Genet. 2020. PMID: 32443951
Endocytosis of Extracellular Vesicles and Release of Their Cargo from Endosomes.
Joshi BS, de Beer MA, Giepmans BNG, Zuhorn IS. Joshi BS, et al. Among authors: de beer ma. ACS Nano. 2020 Apr 28;14(4):4444-4455. doi: 10.1021/acsnano.9b10033. Epub 2020 Apr 16. ACS Nano. 2020. PMID: 32282185 Free PMC article.
Epigenetic activation and memory at a TGFB2 enhancer in systemic sclerosis.
Shin JY, Beckett JD, Bagirzadeh R, Creamer TJ, Shah AA, McMahan Z, Paik JJ, Sampedro MM, MacFarlane EG, Beer MA, Warren D, Wigley FM, Dietz HC. Shin JY, et al. Among authors: beer ma. Sci Transl Med. 2019 Jun 19;11(497):eaaw0790. doi: 10.1126/scitranslmed.aaw0790. Sci Transl Med. 2019. PMID: 31217334 Free PMC article.
Genome-scale screens identify JNK-JUN signaling as a barrier for pluripotency exit and endoderm differentiation.
Li QV, Dixon G, Verma N, Rosen BP, Gordillo M, Luo R, Xu C, Wang Q, Soh CL, Yang D, Crespo M, Shukla A, Xiang Q, D√ľndar F, Zumbo P, Witkin M, Koche R, Betel D, Chen S, Massagu√© J, Garippa R, Evans T, Beer MA, Huangfu D. Li QV, et al. Among authors: beer ma. Nat Genet. 2019 Jun;51(6):999-1010. doi: 10.1038/s41588-019-0408-9. Epub 2019 May 20. Nat Genet. 2019. PMID: 31110351 Free PMC article.
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