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Evolution of primate orphan proteins.
Toll-Riera M, Castelo R, Bellora N, Albà MM. Toll-Riera M, et al. Biochem Soc Trans. 2009 Aug;37(Pt 4):778-82. doi: 10.1042/BST0370778. Biochem Soc Trans. 2009. PMID: 19614593 Review.
Origin of primate orphan genes: a comparative genomics approach.
Toll-Riera M, Bosch N, Bellora N, Castelo R, Armengol L, Estivill X, Albà MM. Toll-Riera M, et al. Mol Biol Evol. 2009 Mar;26(3):603-12. doi: 10.1093/molbev/msn281. Epub 2008 Dec 8. Mol Biol Evol. 2009. PMID: 19064677
Housekeeping genes tend to show reduced upstream sequence conservation.
Farré D, Bellora N, Mularoni L, Messeguer X, Albà MM. Farré D, et al. Genome Biol. 2007;8(7):R140. doi: 10.1186/gb-2007-8-7-r140. Genome Biol. 2007. PMID: 17626644 Free PMC article.
PEAKS: identification of regulatory motifs by their position in DNA sequences.
Bellora N, Farré D, Mar Albà M. Bellora N, et al. Bioinformatics. 2007 Jan 15;23(2):243-4. doi: 10.1093/bioinformatics/btl568. Epub 2006 Nov 10. Bioinformatics. 2007. PMID: 17098773
Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis.
Trilling M, Bellora N, Rutkowski AJ, de Graaf M, Dickinson P, Robertson K, Prazeres da Costa O, Ghazal P, Friedel CC, Albà MM, Dölken L. Trilling M, et al. Nucleic Acids Res. 2013 Sep;41(17):8107-25. doi: 10.1093/nar/gkt589. Epub 2013 Jul 5. Nucleic Acids Res. 2013. PMID: 23832230 Free PMC article.
Preferential binding of a stable G3BP ribonucleoprotein complex to intron-retaining transcripts in mouse brain and modulation of their expression in the cerebellum.
Martin S, Bellora N, González-Vallinas J, Irimia M, Chebli K, de Toledo M, Raabe M, Eyras E, Urlaub H, Blencowe BJ, Tazi J. Martin S, et al. J Neurochem. 2016 Nov;139(3):349-368. doi: 10.1111/jnc.13768. Epub 2016 Oct 18. J Neurochem. 2016. PMID: 27513819
Lineage-specific roles of the cytoplasmic polyadenylation factor CPEB4 in the regulation of melanoma drivers.
Pérez-Guijarro E, Karras P, Cifdaloz M, Martínez-Herranz R, Cañón E, Graña O, Horcajada-Reales C, Alonso-Curbelo D, Calvo TG, Gómez-López G, Bellora N, Riveiro-Falkenbach E, Ortiz-Romero PL, Rodríguez-Peralto JL, Maestre L, Roncador G, de Agustín Asensio JC, Goding CR, Eyras E, Megías D, Méndez R, Soengas MS. Pérez-Guijarro E, et al. Nat Commun. 2016 Nov 18;7:13418. doi: 10.1038/ncomms13418. Nat Commun. 2016. PMID: 27857118 Free PMC article.
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