Belotserkovskii BP - Search Results

1

DNA sequences that interfere with transcription: implications for genome function and stability.

Belotserkovskii BP, Mirkin SM, Hanawalt PC. Belotserkovskii BP, et al. Chem Rev. 2013 Nov 13;113(11):8620-37. doi: 10.1021/cr400078y. Epub 2013 Aug 23. Chem Rev. 2013. PMID: 23972098 Review. No abstract available.

2

Torque-winding interdependence for a flexible polymer chain wound around a cylinder in the presence of obstacles.

Belotserkovskii BP. Belotserkovskii BP. Phys Rev E. 2016 Mar;93(3):032509. doi: 10.1103/PhysRevE.93.032509. Epub 2016 Mar 30. Phys Rev E. 2016. PMID: 27078407

3

R-loop generation during transcription: Formation, processing and cellular outcomes.

Belotserkovskii BP, Tornaletti S, D'Souza AD, Hanawalt PC. Belotserkovskii BP, et al. DNA Repair (Amst). 2018 Nov;71:69-81. doi: 10.1016/j.dnarep.2018.08.009. Epub 2018 Aug 25. DNA Repair (Amst). 2018. PMID: 30190235 Free PMC article. Review.

4

A novel mode for transcription inhibition mediated by PNA-induced R-loops with a model in vitro system.

D'Souza AD, Belotserkovskii BP, Hanawalt PC. D'Souza AD, et al. Among authors: belotserkovskii bp. Biochim Biophys Acta Gene Regul Mech. 2018 Feb;1861(2):158-166. doi: 10.1016/j.bbagrm.2017.12.008. Epub 2018 Jan 31. Biochim Biophys Acta Gene Regul Mech. 2018. PMID: 29357316 Free PMC article.

5

Strong transcription blockage mediated by R-loop formation within a G-rich homopurine-homopyrimidine sequence localized in the vicinity of the promoter.

Belotserkovskii BP, Soo Shin JH, Hanawalt PC. Belotserkovskii BP, et al. Nucleic Acids Res. 2017 Jun 20;45(11):6589-6599. doi: 10.1093/nar/gkx403. Nucleic Acids Res. 2017. PMID: 28498974 Free PMC article.

6

When transcription goes on Holliday: Double Holliday junctions block RNA polymerase II transcription in vitro.

Pipathsouk A, Belotserkovskii BP, Hanawalt PC. Pipathsouk A, et al. Among authors: belotserkovskii bp. Biochim Biophys Acta Gene Regul Mech. 2017 Feb;1860(2):282-288. doi: 10.1016/j.bbagrm.2016.12.002. Epub 2016 Dec 5. Biochim Biophys Acta Gene Regul Mech. 2017. PMID: 27923713 Free PMC article.

7

Transcription blockage by stable H-DNA analogs in vitro.

Pandey S, Ogloblina AM, Belotserkovskii BP, Dolinnaya NG, Yakubovskaya MG, Mirkin SM, Hanawalt PC. Pandey S, et al. Among authors: belotserkovskii bp. Nucleic Acids Res. 2015 Aug 18;43(14):6994-7004. doi: 10.1093/nar/gkv622. Epub 2015 Jun 22. Nucleic Acids Res. 2015. PMID: 26101261 Free PMC article.

8

Relationships between the winding angle, the characteristic radius, and the torque for a long polymer chain wound around a cylinder: implications for RNA winding around DNA during transcription.

Belotserkovskii BP. Belotserkovskii BP. Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Feb;89(2):022709. doi: 10.1103/PhysRevE.89.022709. Epub 2014 Feb 10. Phys Rev E Stat Nonlin Soft Matter Phys. 2014. PMID: 25353511

9

PNA binding to the non-template DNA strand interferes with transcription, suggesting a blockage mechanism mediated by R-loop formation.

Belotserkovskii BP, Hanawalt PC. Belotserkovskii BP, et al. Mol Carcinog. 2015 Nov;54(11):1508-12. doi: 10.1002/mc.22209. Epub 2014 Aug 30. Mol Carcinog. 2015. PMID: 25175074 Free PMC article.

10

Transcription blockage by homopurine DNA sequences: role of sequence composition and single-strand breaks.

Belotserkovskii BP, Neil AJ, Saleh SS, Shin JH, Mirkin SM, Hanawalt PC. Belotserkovskii BP, et al. Nucleic Acids Res. 2013 Feb 1;41(3):1817-28. doi: 10.1093/nar/gks1333. Epub 2012 Dec 28. Nucleic Acids Res. 2013. PMID: 23275544 Free PMC article.

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