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Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis.
Bergiers I, Andrews T, Vargel Bölükbaşı Ö, Buness A, Janosz E, Lopez-Anguita N, Ganter K, Kosim K, Celen C, Itır Perçin G, Collier P, Baying B, Benes V, Hemberg M, Lancrin C. Bergiers I, et al. Among authors: Benes V. Elife. 2018 Mar 20;7:e29312. doi: 10.7554/eLife.29312. Elife. 2018. PMID: 29555020 Free PMC article.
Transcriptome profiling of estrogen-regulated genes in human primary osteoblasts reveals an osteoblast-specific regulation of the insulin-like growth factor binding protein 4 gene.
Denger S, Bähr-Ivacevic T, Brand H, Reid G, Blake J, Seifert M, Lin CY, May K, Benes V, Liu ET, Gannon F. Denger S, et al. Among authors: Benes V. Mol Endocrinol. 2008 Feb;22(2):361-79. doi: 10.1210/me.2007-0292. Epub 2007 Oct 25. Mol Endocrinol. 2008. PMID: 17962383 Free PMC article.
Iron regulatory protein-1 and -2: transcriptome-wide definition of binding mRNAs and shaping of the cellular proteome by iron regulatory proteins.
Sanchez M, Galy B, Schwanhaeusser B, Blake J, Bähr-Ivacevic T, Benes V, Selbach M, Muckenthaler MU, Hentze MW. Sanchez M, et al. Among authors: Benes V. Blood. 2011 Nov 24;118(22):e168-79. doi: 10.1182/blood-2011-04-343541. Epub 2011 Sep 22. Blood. 2011. PMID: 21940823
An efficient method for genome-wide polyadenylation site mapping and RNA quantification.
Wilkening S, Pelechano V, Järvelin AI, Tekkedil MM, Anders S, Benes V, Steinmetz LM. Wilkening S, et al. Among authors: Benes V. Nucleic Acids Res. 2013 Mar 1;41(5):e65. doi: 10.1093/nar/gks1249. Epub 2013 Jan 7. Nucleic Acids Res. 2013. PMID: 23295673 Free PMC article.
Accounting for technical noise in single-cell RNA-seq experiments.
Brennecke P, Anders S, Kim JK, Kołodziejczyk AA, Zhang X, Proserpio V, Baying B, Benes V, Teichmann SA, Marioni JC, Heisler MG. Brennecke P, et al. Among authors: Benes V. Nat Methods. 2013 Nov;10(11):1093-5. doi: 10.1038/nmeth.2645. Epub 2013 Sep 22. Nat Methods. 2013. PMID: 24056876
Telomerase stimulates ribosomal DNA transcription under hyperproliferative conditions.
Gonzalez OG, Assfalg R, Koch S, Schelling A, Meena JK, Kraus J, Lechel A, Katz SF, Benes V, Scharffetter-Kochanek K, Kestler HA, Günes C, Iben S. Gonzalez OG, et al. Among authors: Benes V. Nat Commun. 2014 Aug 13;5:4599. doi: 10.1038/ncomms5599. Nat Commun. 2014. PMID: 25118183
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