Benson G - Search Results

1

Minimal entropy probability paths between genome families.

Ahlbrandt C, Benson G, Casey W. Ahlbrandt C, et al. Among authors: benson g. J Math Biol. 2004 May;48(5):563-90. doi: 10.1007/s00285-003-0248-0. Epub 2003 Dec 2. J Math Biol. 2004. PMID: 15133624

2

The distribution of inverted repeat sequences in the Saccharomyces cerevisiae genome.

Strawbridge EM, Benson G, Gelfand Y, Benham CJ. Strawbridge EM, et al. Among authors: benson g. Curr Genet. 2010 Aug;56(4):321-40. doi: 10.1007/s00294-010-0302-6. Epub 2010 May 6. Curr Genet. 2010. PMID: 20446088 Free PMC article.

3

A new distance measure for comparing sequence profiles based on path lengths along an entropy surface.

Benson G. Benson G. Bioinformatics. 2002;18 Suppl 2:S44-53. doi: 10.1093/bioinformatics/18.suppl_2.s44. Bioinformatics. 2002. PMID: 12385982

4

A method for fast database search for all k-nucleotide repeats.

Benson G, Waterman MS. Benson G, et al. Nucleic Acids Res. 1994 Nov 11;22(22):4828-36. doi: 10.1093/nar/22.22.4828. Nucleic Acids Res. 1994. PMID: 7984436 Free PMC article.

5

Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays.

Tembe W, Zavaljevski N, Bode E, Chase C, Geyer J, Wasieloski L, Benson G, Reifman J. Tembe W, et al. Among authors: benson g. Bioinformatics. 2007 Jan 1;23(1):5-13. doi: 10.1093/bioinformatics/btl549. Epub 2006 Oct 26. Bioinformatics. 2007. PMID: 17068088

6

Tandem repeats over the edit distance.

Sokol D, Benson G, Tojeira J. Sokol D, et al. Among authors: benson g. Bioinformatics. 2007 Jan 15;23(2):e30-5. doi: 10.1093/bioinformatics/btl309. Bioinformatics. 2007. PMID: 17237101

7

BitPAl: a bit-parallel, general integer-scoring sequence alignment algorithm.

Loving J, Hernandez Y, Benson G. Loving J, et al. Among authors: benson g. Bioinformatics. 2014 Nov 15;30(22):3166-73. doi: 10.1093/bioinformatics/btu507. Epub 2014 Jul 29. Bioinformatics. 2014. PMID: 25075119 Free PMC article.

8

All hits all the time: parameter-free calculation of spaced seed sensitivity.

Mak DY, Benson G. Mak DY, et al. Among authors: benson g. Bioinformatics. 2009 Feb 1;25(3):302-8. doi: 10.1093/bioinformatics/btn643. Epub 2008 Dec 18. Bioinformatics. 2009. PMID: 19095701

9

Evaluating distance functions for clustering tandem repeats.

Rao S, Rodriguez A, Benson G. Rao S, et al. Among authors: benson g. Genome Inform. 2005;16(1):3-12. Genome Inform. 2005. PMID: 16362901

10

Indel seeds for homology search.

Mak D, Gelfand Y, Benson G. Mak D, et al. Among authors: benson g. Bioinformatics. 2006 Jul 15;22(14):e341-9. doi: 10.1093/bioinformatics/btl263. Bioinformatics. 2006. PMID: 16873491

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