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Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data.
Benton HP, Want EJ, Ebbels TM. Benton HP, et al. Bioinformatics. 2010 Oct 1;26(19):2488-9. doi: 10.1093/bioinformatics/btq441. Epub 2010 Jul 29. Bioinformatics. 2010. PMID: 20671148
Autonomous Multimodal Metabolomics Data Integration for Comprehensive Pathway Analysis and Systems Biology.
Huan T, Palermo A, Ivanisevic J, Rinehart D, Edler D, Phommavongsay T, Benton HP, Guijas C, Domingo-Almenara X, Warth B, Siuzdak G. Huan T, et al. Among authors: benton hp. Anal Chem. 2018 Jul 17;90(14):8396-8403. doi: 10.1021/acs.analchem.8b00875. Epub 2018 Jun 28. Anal Chem. 2018. PMID: 29893550
Exposome-Scale Investigations Guided by Global Metabolomics, Pathway Analysis, and Cognitive Computing.
Warth B, Spangler S, Fang M, Johnson CH, Forsberg EM, Granados A, Martin RL, Domingo-Almenara X, Huan T, Rinehart D, Montenegro-Burke JR, Hilmers B, Aisporna A, Hoang LT, Uritboonthai W, Benton HP, Richardson SD, Williams AJ, Siuzdak G. Warth B, et al. Among authors: benton hp. Anal Chem. 2017 Nov 7;89(21):11505-11513. doi: 10.1021/acs.analchem.7b02759. Epub 2017 Oct 9. Anal Chem. 2017. PMID: 28945073
Intra- and interlaboratory reproducibility of ultra performance liquid chromatography-time-of-flight mass spectrometry for urinary metabolic profiling.
Benton HP, Want E, Keun HC, Amberg A, Plumb RS, Goldfain-Blanc F, Walther B, Reily MD, Lindon JC, Holmes E, Nicholson JK, Ebbels TM. Benton HP, et al. Anal Chem. 2012 Mar 6;84(5):2424-32. doi: 10.1021/ac203200x. Epub 2012 Feb 13. Anal Chem. 2012. PMID: 22304021
Determining conserved metabolic biomarkers from a million database queries.
Kurczy ME, Ivanisevic J, Johnson CH, Uritboonthai W, Hoang L, Fang M, Hicks M, Aldebot A, Rinehart D, Mellander LJ, Tautenhahn R, Patti GJ, Spilker ME, Benton HP, Siuzdak G. Kurczy ME, et al. Among authors: benton hp. Bioinformatics. 2015 Dec 1;31(23):3721-4. doi: 10.1093/bioinformatics/btv475. Epub 2015 Aug 13. Bioinformatics. 2015. PMID: 26275895 Free PMC article.
XCMS-MRM and METLIN-MRM: a cloud library and public resource for targeted analysis of small molecules.
Domingo-Almenara X, Montenegro-Burke JR, Ivanisevic J, Thomas A, Sidibé J, Teav T, Guijas C, Aisporna AE, Rinehart D, Hoang L, Nordström A, Gómez-Romero M, Whiley L, Lewis MR, Nicholson JK, Benton HP, Siuzdak G. Domingo-Almenara X, et al. Among authors: benton hp. Nat Methods. 2018 Sep;15(9):681-684. doi: 10.1038/s41592-018-0110-3. Epub 2018 Aug 27. Nat Methods. 2018. PMID: 30150755 Free PMC article.
XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization.
Benton HP, Wong DM, Trauger SA, Siuzdak G. Benton HP, et al. Anal Chem. 2008 Aug 15;80(16):6382-9. doi: 10.1021/ac800795f. Epub 2008 Jul 16. Anal Chem. 2008. PMID: 18627180 Free PMC article.
Autonomous metabolomics for rapid metabolite identification in global profiling.
Benton HP, Ivanisevic J, Mahieu NG, Kurczy ME, Johnson CH, Franco L, Rinehart D, Valentine E, Gowda H, Ubhi BK, Tautenhahn R, Gieschen A, Fields MW, Patti GJ, Siuzdak G. Benton HP, et al. Anal Chem. 2015 Jan 20;87(2):884-91. doi: 10.1021/ac5025649. Epub 2014 Dec 26. Anal Chem. 2015. PMID: 25496351 Free PMC article.
Systems biology guided by XCMS Online metabolomics.
Huan T, Forsberg EM, Rinehart D, Johnson CH, Ivanisevic J, Benton HP, Fang M, Aisporna A, Hilmers B, Poole FL, Thorgersen MP, Adams MWW, Krantz G, Fields MW, Robbins PD, Niedernhofer LJ, Ideker T, Majumder EL, Wall JD, Rattray NJW, Goodacre R, Lairson LL, Siuzdak G. Huan T, et al. Among authors: benton hp. Nat Methods. 2017 Apr 27;14(5):461-462. doi: 10.1038/nmeth.4260. Nat Methods. 2017. PMID: 28448069 Free PMC article. No abstract available.
Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data.
Barnes S, Benton HP, Casazza K, Cooper SJ, Cui X, Du X, Engler J, Kabarowski JH, Li S, Pathmasiri W, Prasain JK, Renfrow MB, Tiwari HK. Barnes S, et al. Among authors: benton hp. J Mass Spectrom. 2016 Jul;51(7):461-75. doi: 10.1002/jms.3782. J Mass Spectrom. 2016. PMID: 27434804 Free PMC article.
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